Experiment: shik 5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000424 and ABIE53_000425 are separated by 210 nucleotides ABIE53_000425 and ABIE53_000426 are separated by 90 nucleotides
ABIE53_000424: ABIE53_000424 - G3E family GTPase, at 459,013 to 460,137
_000424
ABIE53_000425: ABIE53_000425 - 23S rRNA (cytosine1962-C5)-methyltransferase, at 460,348 to 461,550
_000425
ABIE53_000426: ABIE53_000426 - integrase/recombinase XerC, at 461,641 to 462,564
_000426
Position (kb) 460
461
462 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 459.471 kb on + strand, within ABIE53_000424 at 459.471 kb on + strand, within ABIE53_000424 at 459.471 kb on + strand, within ABIE53_000424 at 459.472 kb on - strand, within ABIE53_000424 at 459.609 kb on + strand, within ABIE53_000424 at 459.609 kb on + strand, within ABIE53_000424 at 459.609 kb on + strand, within ABIE53_000424 at 459.609 kb on + strand, within ABIE53_000424 at 459.609 kb on + strand, within ABIE53_000424 at 459.609 kb on + strand, within ABIE53_000424 at 459.609 kb on + strand, within ABIE53_000424 at 459.609 kb on + strand, within ABIE53_000424 at 459.609 kb on + strand, within ABIE53_000424 at 459.609 kb on + strand, within ABIE53_000424 at 459.609 kb on + strand, within ABIE53_000424 at 459.609 kb on + strand, within ABIE53_000424 at 459.609 kb on + strand, within ABIE53_000424 at 459.610 kb on - strand, within ABIE53_000424 at 459.610 kb on - strand, within ABIE53_000424 at 459.610 kb on - strand, within ABIE53_000424 at 459.610 kb on - strand, within ABIE53_000424 at 459.610 kb on - strand, within ABIE53_000424 at 459.610 kb on - strand, within ABIE53_000424 at 459.610 kb on - strand, within ABIE53_000424 at 460.089 kb on + strand at 460.089 kb on + strand at 460.089 kb on + strand at 460.089 kb on + strand at 460.090 kb on - strand at 460.148 kb on + strand at 460.149 kb on - strand at 460.150 kb on + strand at 460.150 kb on + strand at 460.150 kb on + strand at 460.150 kb on + strand at 460.150 kb on + strand at 460.150 kb on + strand at 460.151 kb on - strand at 460.151 kb on - strand at 460.151 kb on - strand at 460.151 kb on - strand at 460.151 kb on - strand at 460.151 kb on - strand at 460.151 kb on - strand at 460.151 kb on - strand at 460.151 kb on - strand at 460.151 kb on - strand at 460.151 kb on - strand at 460.151 kb on - strand at 460.151 kb on - strand at 460.151 kb on - strand at 460.170 kb on + strand at 460.170 kb on + strand at 460.170 kb on + strand at 460.170 kb on + strand at 460.171 kb on - strand at 460.171 kb on - strand at 460.176 kb on + strand at 460.176 kb on + strand at 460.176 kb on + strand at 460.176 kb on + strand at 460.176 kb on + strand at 460.177 kb on - strand at 460.177 kb on - strand at 460.177 kb on - strand at 460.177 kb on - strand at 460.177 kb on - strand at 460.177 kb on - strand at 460.183 kb on - strand at 460.183 kb on - strand at 460.183 kb on - strand at 460.183 kb on - strand at 460.193 kb on + strand at 460.193 kb on + strand at 460.193 kb on + strand at 460.193 kb on + strand at 460.193 kb on + strand at 460.194 kb on - strand at 460.194 kb on - strand at 460.194 kb on - strand at 460.194 kb on - strand at 460.194 kb on - strand at 460.199 kb on + strand at 460.261 kb on + strand at 460.261 kb on + strand at 460.261 kb on + strand at 460.261 kb on + strand at 460.261 kb on + strand at 460.261 kb on + strand at 460.261 kb on + strand at 460.261 kb on + strand at 460.261 kb on + strand at 460.261 kb on + strand at 460.262 kb on - strand at 460.262 kb on - strand at 460.262 kb on - strand at 460.262 kb on - strand at 460.262 kb on - strand at 460.262 kb on - strand at 460.262 kb on - strand at 460.262 kb on - strand at 460.262 kb on - strand at 460.262 kb on - strand at 460.262 kb on - strand at 460.262 kb on - strand at 460.262 kb on - strand at 460.262 kb on - strand at 460.262 kb on - strand at 460.262 kb on - strand at 460.262 kb on - strand at 460.262 kb on - strand at 460.327 kb on + strand at 460.327 kb on + strand at 460.327 kb on + strand at 460.327 kb on + strand at 460.327 kb on + strand at 460.328 kb on - strand at 460.328 kb on - strand at 460.339 kb on + strand at 460.340 kb on - strand at 460.340 kb on - strand at 460.340 kb on - strand at 460.340 kb on - strand at 460.340 kb on - strand at 460.340 kb on - strand at 460.341 kb on + strand at 460.341 kb on + strand at 460.342 kb on - strand at 460.342 kb on - strand at 460.342 kb on - strand at 460.342 kb on - strand at 460.379 kb on + strand at 460.379 kb on + strand at 460.379 kb on + strand at 460.380 kb on - strand at 460.380 kb on - strand at 460.380 kb on - strand at 460.526 kb on + strand, within ABIE53_000425 at 460.526 kb on + strand, within ABIE53_000425 at 460.526 kb on + strand, within ABIE53_000425 at 460.526 kb on + strand, within ABIE53_000425 at 460.526 kb on + strand, within ABIE53_000425 at 460.526 kb on + strand, within ABIE53_000425 at 460.526 kb on + strand, within ABIE53_000425 at 460.526 kb on + strand, within ABIE53_000425 at 460.526 kb on + strand, within ABIE53_000425 at 460.526 kb on + strand, within ABIE53_000425 at 460.527 kb on - strand, within ABIE53_000425 at 460.527 kb on - strand, within ABIE53_000425 at 460.527 kb on - strand, within ABIE53_000425 at 460.527 kb on - strand, within ABIE53_000425 at 460.586 kb on + strand, within ABIE53_000425 at 460.586 kb on + strand, within ABIE53_000425 at 460.586 kb on + strand, within ABIE53_000425 at 460.587 kb on - strand, within ABIE53_000425 at 460.587 kb on - strand, within ABIE53_000425 at 460.587 kb on - strand, within ABIE53_000425 at 460.587 kb on - strand, within ABIE53_000425 at 460.676 kb on + strand, within ABIE53_000425 at 460.850 kb on + strand, within ABIE53_000425 at 460.850 kb on + strand, within ABIE53_000425 at 460.851 kb on - strand, within ABIE53_000425 at 460.851 kb on - strand, within ABIE53_000425 at 460.925 kb on + strand, within ABIE53_000425 at 460.925 kb on + strand, within ABIE53_000425 at 460.925 kb on + strand, within ABIE53_000425 at 460.925 kb on + strand, within ABIE53_000425 at 460.925 kb on + strand, within ABIE53_000425 at 460.925 kb on + strand, within ABIE53_000425 at 460.925 kb on + strand, within ABIE53_000425 at 460.925 kb on + strand, within ABIE53_000425 at 460.926 kb on - strand, within ABIE53_000425 at 460.926 kb on - strand, within ABIE53_000425 at 460.926 kb on - strand, within ABIE53_000425 at 460.926 kb on - strand, within ABIE53_000425 at 460.965 kb on - strand, within ABIE53_000425 at 461.038 kb on + strand, within ABIE53_000425 at 461.038 kb on + strand, within ABIE53_000425 at 461.039 kb on - strand, within ABIE53_000425 at 461.039 kb on - strand, within ABIE53_000425 at 461.078 kb on + strand, within ABIE53_000425 at 461.078 kb on + strand, within ABIE53_000425 at 461.078 kb on + strand, within ABIE53_000425 at 461.078 kb on + strand, within ABIE53_000425 at 461.078 kb on + strand, within ABIE53_000425 at 461.201 kb on + strand, within ABIE53_000425 at 461.201 kb on + strand, within ABIE53_000425 at 461.201 kb on + strand, within ABIE53_000425 at 461.201 kb on + strand, within ABIE53_000425 at 461.201 kb on + strand, within ABIE53_000425 at 461.201 kb on + strand, within ABIE53_000425 at 461.201 kb on + strand, within ABIE53_000425 at 461.202 kb on - strand, within ABIE53_000425 at 461.202 kb on - strand, within ABIE53_000425 at 461.202 kb on - strand, within ABIE53_000425 at 461.202 kb on - strand, within ABIE53_000425 at 461.486 kb on + strand at 461.486 kb on + strand at 461.486 kb on + strand at 461.487 kb on - strand at 461.487 kb on - strand at 461.487 kb on - strand at 461.487 kb on - strand at 461.539 kb on - strand at 461.544 kb on + strand at 461.544 kb on + strand at 461.544 kb on + strand at 461.545 kb on - strand at 461.620 kb on + strand at 461.621 kb on - strand at 461.621 kb on - strand at 461.621 kb on - strand at 461.678 kb on + strand at 461.714 kb on + strand at 461.714 kb on + strand at 461.714 kb on + strand at 461.715 kb on - strand at 462.326 kb on + strand, within ABIE53_000426 at 462.327 kb on - strand, within ABIE53_000426 at 462.411 kb on + strand, within ABIE53_000426 at 462.536 kb on + strand at 462.536 kb on + strand at 462.536 kb on + strand at 462.537 kb on - strand at 462.537 kb on - strand at 462.537 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction shik 5mM remove 459,471 + ABIE53_000424 0.41 -0.7 459,471 + ABIE53_000424 0.41 +1.2 459,471 + ABIE53_000424 0.41 +0.4 459,472 - ABIE53_000424 0.41 -0.1 459,609 + ABIE53_000424 0.53 -0.9 459,609 + ABIE53_000424 0.53 -2.0 459,609 + ABIE53_000424 0.53 -0.6 459,609 + ABIE53_000424 0.53 -0.9 459,609 + ABIE53_000424 0.53 -0.8 459,609 + ABIE53_000424 0.53 -0.5 459,609 + ABIE53_000424 0.53 -1.1 459,609 + ABIE53_000424 0.53 +0.0 459,609 + ABIE53_000424 0.53 -1.0 459,609 + ABIE53_000424 0.53 -0.2 459,609 + ABIE53_000424 0.53 -0.2 459,609 + ABIE53_000424 0.53 +1.1 459,609 + ABIE53_000424 0.53 -2.3 459,610 - ABIE53_000424 0.53 +0.8 459,610 - ABIE53_000424 0.53 +1.7 459,610 - ABIE53_000424 0.53 -1.4 459,610 - ABIE53_000424 0.53 +0.5 459,610 - ABIE53_000424 0.53 -0.4 459,610 - ABIE53_000424 0.53 -0.3 459,610 - ABIE53_000424 0.53 +0.3 460,089 + -1.2 460,089 + +1.0 460,089 + -1.1 460,089 + +0.5 460,090 - +2.1 460,148 + -0.3 460,149 - +0.1 460,150 + -0.3 460,150 + -0.8 460,150 + -0.5 460,150 + -0.6 460,150 + +1.1 460,150 + -0.8 460,151 - -0.5 460,151 - -0.6 460,151 - -0.4 460,151 - -0.1 460,151 - -0.6 460,151 - +0.7 460,151 - -2.0 460,151 - +0.1 460,151 - -0.1 460,151 - -0.7 460,151 - +0.5 460,151 - +0.6 460,151 - -2.1 460,151 - +0.4 460,170 + +2.1 460,170 + -1.1 460,170 + +0.1 460,170 + -0.9 460,171 - -0.7 460,171 - +0.2 460,176 + +1.6 460,176 + -1.1 460,176 + +0.3 460,176 + +0.1 460,176 + -0.7 460,177 - +0.3 460,177 - +0.5 460,177 - -0.5 460,177 - -0.4 460,177 - -0.6 460,177 - +0.2 460,183 - +0.3 460,183 - +0.7 460,183 - -0.9 460,183 - -1.5 460,193 + +1.7 460,193 + +1.3 460,193 + +3.1 460,193 + -1.1 460,193 + +0.7 460,194 - -1.6 460,194 - +1.5 460,194 - -0.3 460,194 - +3.4 460,194 - -0.4 460,199 + -1.0 460,261 + -1.5 460,261 + -0.2 460,261 + +0.4 460,261 + -0.8 460,261 + +0.2 460,261 + +0.8 460,261 + +1.5 460,261 + -1.5 460,261 + +0.0 460,261 + +0.3 460,262 - +0.5 460,262 - +1.1 460,262 - -0.9 460,262 - -0.8 460,262 - -0.1 460,262 - +0.1 460,262 - -0.3 460,262 - -0.8 460,262 - -0.6 460,262 - +0.7 460,262 - -1.3 460,262 - +0.5 460,262 - -0.0 460,262 - -0.4 460,262 - -1.3 460,262 - +0.9 460,262 - +0.1 460,262 - +1.3 460,327 + -0.5 460,327 + -1.7 460,327 + -0.2 460,327 + +0.3 460,327 + -0.0 460,328 - +0.5 460,328 - +0.1 460,339 + +0.2 460,340 - -0.3 460,340 - -2.2 460,340 - -0.5 460,340 - -0.8 460,340 - +0.3 460,340 - +0.2 460,341 + -0.7 460,341 + +0.8 460,342 - +1.5 460,342 - -1.0 460,342 - +2.1 460,342 - -0.1 460,379 + +1.4 460,379 + -0.2 460,379 + +0.7 460,380 - +0.2 460,380 - -1.0 460,380 - +1.7 460,526 + ABIE53_000425 0.15 -0.9 460,526 + ABIE53_000425 0.15 -0.9 460,526 + ABIE53_000425 0.15 -1.5 460,526 + ABIE53_000425 0.15 +0.1 460,526 + ABIE53_000425 0.15 -0.1 460,526 + ABIE53_000425 0.15 -1.7 460,526 + ABIE53_000425 0.15 +0.2 460,526 + ABIE53_000425 0.15 -0.8 460,526 + ABIE53_000425 0.15 +0.3 460,526 + ABIE53_000425 0.15 -2.6 460,527 - ABIE53_000425 0.15 +2.4 460,527 - ABIE53_000425 0.15 -1.3 460,527 - ABIE53_000425 0.15 +0.6 460,527 - ABIE53_000425 0.15 +2.1 460,586 + ABIE53_000425 0.20 -0.8 460,586 + ABIE53_000425 0.20 -0.2 460,586 + ABIE53_000425 0.20 +3.7 460,587 - ABIE53_000425 0.20 -0.9 460,587 - ABIE53_000425 0.20 +0.5 460,587 - ABIE53_000425 0.20 +2.1 460,587 - ABIE53_000425 0.20 -0.5 460,676 + ABIE53_000425 0.27 +1.5 460,850 + ABIE53_000425 0.42 -0.6 460,850 + ABIE53_000425 0.42 -0.7 460,851 - ABIE53_000425 0.42 -0.8 460,851 - ABIE53_000425 0.42 +0.8 460,925 + ABIE53_000425 0.48 -0.8 460,925 + ABIE53_000425 0.48 -0.3 460,925 + ABIE53_000425 0.48 +2.5 460,925 + ABIE53_000425 0.48 +0.4 460,925 + ABIE53_000425 0.48 +0.2 460,925 + ABIE53_000425 0.48 -2.3 460,925 + ABIE53_000425 0.48 +0.6 460,925 + ABIE53_000425 0.48 +0.7 460,926 - ABIE53_000425 0.48 -0.9 460,926 - ABIE53_000425 0.48 +0.1 460,926 - ABIE53_000425 0.48 -1.3 460,926 - ABIE53_000425 0.48 +1.7 460,965 - ABIE53_000425 0.51 +0.8 461,038 + ABIE53_000425 0.57 +1.7 461,038 + ABIE53_000425 0.57 -1.3 461,039 - ABIE53_000425 0.57 +0.4 461,039 - ABIE53_000425 0.57 -0.1 461,078 + ABIE53_000425 0.61 -1.1 461,078 + ABIE53_000425 0.61 -0.7 461,078 + ABIE53_000425 0.61 -0.0 461,078 + ABIE53_000425 0.61 +0.2 461,078 + ABIE53_000425 0.61 -0.4 461,201 + ABIE53_000425 0.71 +0.2 461,201 + ABIE53_000425 0.71 -0.8 461,201 + ABIE53_000425 0.71 -1.1 461,201 + ABIE53_000425 0.71 -0.3 461,201 + ABIE53_000425 0.71 -0.2 461,201 + ABIE53_000425 0.71 +0.5 461,201 + ABIE53_000425 0.71 +0.3 461,202 - ABIE53_000425 0.71 -1.8 461,202 - ABIE53_000425 0.71 -1.2 461,202 - ABIE53_000425 0.71 +0.2 461,202 - ABIE53_000425 0.71 -0.5 461,486 + +0.7 461,486 + -0.0 461,486 + -0.5 461,487 - -0.3 461,487 - +0.5 461,487 - +0.6 461,487 - -1.4 461,539 - -0.0 461,544 + +0.2 461,544 + -0.9 461,544 + +0.1 461,545 - +0.1 461,620 + +0.5 461,621 - +0.3 461,621 - -2.7 461,621 - -2.1 461,678 + -0.7 461,714 + -0.4 461,714 + -1.4 461,714 + -0.4 461,715 - -0.3 462,326 + ABIE53_000426 0.74 -0.9 462,327 - ABIE53_000426 0.74 -0.7 462,411 + ABIE53_000426 0.83 -0.7 462,536 + -0.7 462,536 + -0.6 462,536 + -1.1 462,537 - +0.6 462,537 - -0.3 462,537 - -0.5
Or see this region's nucleotide sequence