Experiment: LB; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0671 and SO0672 are separated by 45 nucleotides SO0672 and SO0673 are separated by 143 nucleotides SO0673 and SO0674 are separated by 76 nucleotides
SO0671: SO0671 - hypothetical protein (NCBI ptt file), at 689,864 to 690,100
SO0671
SO0672: SO0672 - hypothetical protein (NCBI ptt file), at 690,146 to 690,760
SO0672
SO0673: SO0673 - hypothetical protein (NCBI ptt file), at 690,904 to 692,157
SO0673
SO0674: SO0674 - prophage MuSo1, protein Gp32, putative (NCBI ptt file), at 692,234 to 693,403
SO0674
Position (kb) 690
691
692
693 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 689.928 kb on + strand, within SO0671 at 689.928 kb on + strand, within SO0671 at 689.930 kb on + strand, within SO0671 at 689.930 kb on + strand, within SO0671 at 689.936 kb on - strand, within SO0671 at 689.938 kb on + strand, within SO0671 at 689.938 kb on - strand, within SO0671 at 689.938 kb on - strand, within SO0671 at 689.945 kb on - strand, within SO0671 at 689.945 kb on - strand, within SO0671 at 689.959 kb on - strand, within SO0671 at 690.002 kb on - strand, within SO0671 at 690.003 kb on - strand, within SO0671 at 690.003 kb on - strand, within SO0671 at 690.019 kb on + strand, within SO0671 at 690.078 kb on + strand at 690.079 kb on + strand at 690.079 kb on + strand at 690.087 kb on - strand at 690.087 kb on - strand at 690.087 kb on - strand at 690.090 kb on + strand at 690.098 kb on - strand at 690.098 kb on - strand at 690.169 kb on + strand at 690.175 kb on - strand at 690.175 kb on - strand at 690.177 kb on - strand at 690.179 kb on + strand at 690.179 kb on + strand at 690.187 kb on - strand at 690.187 kb on - strand at 690.187 kb on - strand at 690.187 kb on - strand at 690.187 kb on - strand at 690.191 kb on + strand at 690.197 kb on + strand at 690.221 kb on - strand, within SO0672 at 690.222 kb on + strand, within SO0672 at 690.231 kb on - strand, within SO0672 at 690.237 kb on + strand, within SO0672 at 690.245 kb on - strand, within SO0672 at 690.253 kb on - strand, within SO0672 at 690.255 kb on - strand, within SO0672 at 690.255 kb on - strand, within SO0672 at 690.255 kb on - strand, within SO0672 at 690.255 kb on - strand, within SO0672 at 690.255 kb on - strand, within SO0672 at 690.260 kb on - strand, within SO0672 at 690.262 kb on + strand, within SO0672 at 690.272 kb on - strand, within SO0672 at 690.302 kb on + strand, within SO0672 at 690.307 kb on + strand, within SO0672 at 690.322 kb on + strand, within SO0672 at 690.330 kb on - strand, within SO0672 at 690.330 kb on - strand, within SO0672 at 690.330 kb on - strand, within SO0672 at 690.332 kb on + strand, within SO0672 at 690.352 kb on - strand, within SO0672 at 690.362 kb on - strand, within SO0672 at 690.367 kb on + strand, within SO0672 at 690.369 kb on - strand, within SO0672 at 690.406 kb on - strand, within SO0672 at 690.408 kb on + strand, within SO0672 at 690.408 kb on + strand, within SO0672 at 690.451 kb on + strand, within SO0672 at 690.459 kb on - strand, within SO0672 at 690.464 kb on + strand, within SO0672 at 690.464 kb on + strand, within SO0672 at 690.469 kb on + strand, within SO0672 at 690.469 kb on + strand, within SO0672 at 690.469 kb on + strand, within SO0672 at 690.469 kb on + strand, within SO0672 at 690.472 kb on - strand, within SO0672 at 690.472 kb on - strand, within SO0672 at 690.472 kb on - strand, within SO0672 at 690.472 kb on - strand, within SO0672 at 690.475 kb on + strand, within SO0672 at 690.477 kb on - strand, within SO0672 at 690.486 kb on + strand, within SO0672 at 690.503 kb on + strand, within SO0672 at 690.514 kb on - strand, within SO0672 at 690.521 kb on - strand, within SO0672 at 690.541 kb on + strand, within SO0672 at 690.580 kb on + strand, within SO0672 at 690.580 kb on + strand, within SO0672 at 690.636 kb on + strand, within SO0672 at 690.636 kb on + strand, within SO0672 at 690.636 kb on + strand, within SO0672 at 690.636 kb on + strand, within SO0672 at 690.636 kb on + strand, within SO0672 at 690.642 kb on - strand, within SO0672 at 690.642 kb on - strand, within SO0672 at 690.643 kb on + strand, within SO0672 at 690.651 kb on - strand, within SO0672 at 690.651 kb on - strand, within SO0672 at 690.651 kb on - strand, within SO0672 at 690.651 kb on - strand, within SO0672 at 690.676 kb on + strand, within SO0672 at 690.684 kb on - strand, within SO0672 at 690.684 kb on - strand, within SO0672 at 690.688 kb on - strand, within SO0672 at 690.701 kb on - strand at 690.711 kb on + strand at 690.711 kb on - strand at 690.712 kb on + strand at 690.714 kb on - strand at 690.719 kb on - strand at 690.728 kb on + strand at 690.736 kb on - strand at 690.743 kb on - strand at 690.748 kb on - strand at 690.748 kb on - strand at 690.748 kb on - strand at 690.754 kb on + strand at 690.758 kb on - strand at 690.758 kb on - strand at 690.818 kb on + strand at 690.818 kb on + strand at 690.818 kb on + strand at 690.818 kb on + strand at 690.818 kb on + strand at 690.820 kb on + strand at 690.825 kb on + strand at 690.826 kb on - strand at 690.826 kb on - strand at 690.833 kb on - strand at 690.833 kb on - strand at 690.833 kb on - strand at 690.921 kb on + strand at 691.029 kb on + strand at 691.029 kb on + strand at 691.143 kb on + strand, within SO0673 at 691.211 kb on + strand, within SO0673 at 691.267 kb on - strand, within SO0673 at 691.277 kb on - strand, within SO0673 at 691.428 kb on + strand, within SO0673 at 691.428 kb on + strand, within SO0673 at 691.428 kb on + strand, within SO0673 at 691.439 kb on + strand, within SO0673 at 691.439 kb on + strand, within SO0673 at 691.439 kb on + strand, within SO0673 at 691.439 kb on + strand, within SO0673 at 691.440 kb on + strand, within SO0673 at 691.449 kb on + strand, within SO0673 at 691.456 kb on + strand, within SO0673 at 691.457 kb on - strand, within SO0673 at 691.496 kb on + strand, within SO0673 at 691.496 kb on + strand, within SO0673 at 691.496 kb on + strand, within SO0673 at 691.496 kb on + strand, within SO0673 at 691.496 kb on + strand, within SO0673 at 691.496 kb on + strand, within SO0673 at 691.497 kb on + strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.505 kb on - strand, within SO0673 at 691.528 kb on - strand, within SO0673 at 691.548 kb on + strand, within SO0673 at 691.548 kb on + strand, within SO0673 at 691.551 kb on - strand, within SO0673 at 691.556 kb on - strand, within SO0673 at 691.556 kb on - strand, within SO0673 at 691.561 kb on + strand, within SO0673 at 691.569 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.614 kb on - strand, within SO0673 at 691.620 kb on + strand, within SO0673 at 691.620 kb on + strand, within SO0673 at 691.630 kb on + strand, within SO0673 at 691.642 kb on - strand, within SO0673 at 691.642 kb on - strand, within SO0673 at 691.827 kb on + strand, within SO0673 at 691.827 kb on + strand, within SO0673 at 691.828 kb on + strand, within SO0673 at 691.835 kb on - strand, within SO0673 at 691.835 kb on - strand, within SO0673 at 691.835 kb on - strand, within SO0673 at 691.845 kb on - strand, within SO0673 at 691.860 kb on - strand, within SO0673 at 691.860 kb on - strand, within SO0673 at 691.934 kb on - strand, within SO0673 at 691.979 kb on - strand, within SO0673 at 692.022 kb on + strand, within SO0673 at 692.022 kb on + strand, within SO0673 at 692.022 kb on + strand, within SO0673 at 692.030 kb on - strand, within SO0673 at 692.030 kb on - strand, within SO0673 at 692.031 kb on - strand, within SO0673 at 692.033 kb on - strand at 692.064 kb on + strand at 692.065 kb on + strand at 692.072 kb on - strand at 692.079 kb on - strand at 692.106 kb on - strand at 692.135 kb on + strand at 692.135 kb on + strand at 692.142 kb on + strand at 692.158 kb on + strand at 692.159 kb on + strand at 692.167 kb on - strand at 692.181 kb on + strand at 692.181 kb on + strand at 692.185 kb on - strand at 692.187 kb on + strand at 692.189 kb on - strand at 692.189 kb on - strand at 692.191 kb on + strand at 692.204 kb on - strand at 692.209 kb on + strand at 692.217 kb on - strand at 692.217 kb on - strand at 692.232 kb on - strand at 692.242 kb on - strand at 692.257 kb on - strand at 692.287 kb on - strand at 692.289 kb on + strand at 692.318 kb on + strand at 692.318 kb on + strand at 692.326 kb on + strand at 692.340 kb on + strand at 692.350 kb on + strand at 692.479 kb on + strand, within SO0674 at 692.527 kb on + strand, within SO0674 at 692.535 kb on - strand, within SO0674 at 692.548 kb on + strand, within SO0674 at 692.574 kb on + strand, within SO0674 at 692.587 kb on - strand, within SO0674 at 692.621 kb on + strand, within SO0674 at 692.624 kb on + strand, within SO0674 at 692.629 kb on + strand, within SO0674 at 692.637 kb on - strand, within SO0674 at 692.637 kb on - strand, within SO0674 at 692.637 kb on - strand, within SO0674 at 692.637 kb on - strand, within SO0674 at 692.689 kb on - strand, within SO0674 at 692.735 kb on - strand, within SO0674 at 692.740 kb on - strand, within SO0674 at 692.746 kb on - strand, within SO0674 at 692.804 kb on - strand, within SO0674 at 692.811 kb on - strand, within SO0674 at 692.827 kb on - strand, within SO0674 at 692.917 kb on + strand, within SO0674 at 692.917 kb on + strand, within SO0674 at 692.925 kb on - strand, within SO0674 at 692.925 kb on - strand, within SO0674 at 693.018 kb on + strand, within SO0674 at 693.108 kb on + strand, within SO0674 at 693.116 kb on - strand, within SO0674 at 693.142 kb on + strand, within SO0674 at 693.149 kb on + strand, within SO0674
Per-strain Table
Position Strand Gene LocusTag Fraction LB; anaerobic remove 689,928 + SO0671 0.27 -1.2 689,928 + SO0671 0.27 +0.4 689,930 + SO0671 0.28 +2.2 689,930 + SO0671 0.28 -1.7 689,936 - SO0671 0.30 -3.2 689,938 + SO0671 0.31 -1.9 689,938 - SO0671 0.31 -2.1 689,938 - SO0671 0.31 -3.6 689,945 - SO0671 0.34 -0.5 689,945 - SO0671 0.34 -0.9 689,959 - SO0671 0.40 -1.6 690,002 - SO0671 0.58 +0.8 690,003 - SO0671 0.59 +0.5 690,003 - SO0671 0.59 +0.4 690,019 + SO0671 0.65 +0.1 690,078 + +0.6 690,079 + -0.2 690,079 + -1.7 690,087 - -0.4 690,087 - +1.4 690,087 - -1.8 690,090 + +0.1 690,098 - -3.4 690,098 - -0.8 690,169 + +2.8 690,175 - +1.1 690,175 - -0.9 690,177 - -2.7 690,179 + +0.3 690,179 + -1.6 690,187 - +0.8 690,187 - +0.6 690,187 - -0.1 690,187 - +1.3 690,187 - -2.5 690,191 + -1.5 690,197 + +0.1 690,221 - SO0672 0.12 +0.1 690,222 + SO0672 0.12 -0.9 690,231 - SO0672 0.14 -1.2 690,237 + SO0672 0.15 +1.0 690,245 - SO0672 0.16 -2.4 690,253 - SO0672 0.17 -0.9 690,255 - SO0672 0.18 +0.9 690,255 - SO0672 0.18 -0.2 690,255 - SO0672 0.18 +0.3 690,255 - SO0672 0.18 +0.8 690,255 - SO0672 0.18 -0.5 690,260 - SO0672 0.19 +1.1 690,262 + SO0672 0.19 +0.6 690,272 - SO0672 0.20 +0.3 690,302 + SO0672 0.25 +0.1 690,307 + SO0672 0.26 -0.9 690,322 + SO0672 0.29 -0.3 690,330 - SO0672 0.30 +0.6 690,330 - SO0672 0.30 -2.5 690,330 - SO0672 0.30 +0.4 690,332 + SO0672 0.30 -0.1 690,352 - SO0672 0.33 +0.4 690,362 - SO0672 0.35 +0.5 690,367 + SO0672 0.36 -1.6 690,369 - SO0672 0.36 -0.9 690,406 - SO0672 0.42 -3.5 690,408 + SO0672 0.43 +0.0 690,408 + SO0672 0.43 +0.8 690,451 + SO0672 0.50 -0.2 690,459 - SO0672 0.51 -1.2 690,464 + SO0672 0.52 -0.0 690,464 + SO0672 0.52 +0.5 690,469 + SO0672 0.53 +1.9 690,469 + SO0672 0.53 -3.1 690,469 + SO0672 0.53 -1.7 690,469 + SO0672 0.53 -1.4 690,472 - SO0672 0.53 +0.5 690,472 - SO0672 0.53 -2.2 690,472 - SO0672 0.53 +1.4 690,472 - SO0672 0.53 -0.6 690,475 + SO0672 0.53 -0.1 690,477 - SO0672 0.54 -0.6 690,486 + SO0672 0.55 -1.1 690,503 + SO0672 0.58 -0.4 690,514 - SO0672 0.60 +0.3 690,521 - SO0672 0.61 -4.4 690,541 + SO0672 0.64 +2.9 690,580 + SO0672 0.71 -0.8 690,580 + SO0672 0.71 -1.2 690,636 + SO0672 0.80 -1.2 690,636 + SO0672 0.80 -3.2 690,636 + SO0672 0.80 +0.1 690,636 + SO0672 0.80 +0.4 690,636 + SO0672 0.80 -0.5 690,642 - SO0672 0.81 -0.8 690,642 - SO0672 0.81 +0.6 690,643 + SO0672 0.81 +1.7 690,651 - SO0672 0.82 -1.9 690,651 - SO0672 0.82 -2.3 690,651 - SO0672 0.82 -0.9 690,651 - SO0672 0.82 -1.2 690,676 + SO0672 0.86 +2.6 690,684 - SO0672 0.87 -1.1 690,684 - SO0672 0.87 -3.9 690,688 - SO0672 0.88 -0.5 690,701 - +1.5 690,711 + -1.2 690,711 - +0.7 690,712 + -1.9 690,714 - -0.1 690,719 - -1.0 690,728 + +0.8 690,736 - -0.2 690,743 - -1.7 690,748 - +2.7 690,748 - -0.9 690,748 - -0.5 690,754 + +0.1 690,758 - -2.2 690,758 - +0.9 690,818 + +0.6 690,818 + -2.3 690,818 + +0.8 690,818 + +0.2 690,818 + -0.1 690,820 + +0.3 690,825 + -0.1 690,826 - -0.9 690,826 - -0.9 690,833 - -0.8 690,833 - +0.2 690,833 - -0.6 690,921 + +3.2 691,029 + +0.1 691,029 + +4.5 691,143 + SO0673 0.19 +0.2 691,211 + SO0673 0.24 +1.0 691,267 - SO0673 0.29 +1.7 691,277 - SO0673 0.30 -1.2 691,428 + SO0673 0.42 -0.4 691,428 + SO0673 0.42 -2.4 691,428 + SO0673 0.42 +0.5 691,439 + SO0673 0.43 -0.7 691,439 + SO0673 0.43 -1.9 691,439 + SO0673 0.43 -2.1 691,439 + SO0673 0.43 +0.9 691,440 + SO0673 0.43 +2.1 691,449 + SO0673 0.43 +0.3 691,456 + SO0673 0.44 +0.8 691,457 - SO0673 0.44 -0.3 691,496 + SO0673 0.47 -1.1 691,496 + SO0673 0.47 -0.2 691,496 + SO0673 0.47 -1.2 691,496 + SO0673 0.47 +0.3 691,496 + SO0673 0.47 +0.5 691,496 + SO0673 0.47 +1.0 691,497 + SO0673 0.47 -0.1 691,504 - SO0673 0.48 +0.1 691,504 - SO0673 0.48 -2.5 691,504 - SO0673 0.48 -1.0 691,504 - SO0673 0.48 +0.0 691,504 - SO0673 0.48 -0.5 691,504 - SO0673 0.48 +2.0 691,504 - SO0673 0.48 -1.0 691,504 - SO0673 0.48 +1.2 691,504 - SO0673 0.48 -0.9 691,504 - SO0673 0.48 -0.1 691,505 - SO0673 0.48 -0.9 691,528 - SO0673 0.50 +2.0 691,548 + SO0673 0.51 -0.5 691,548 + SO0673 0.51 -1.9 691,551 - SO0673 0.52 -1.2 691,556 - SO0673 0.52 +0.9 691,556 - SO0673 0.52 -1.9 691,561 + SO0673 0.52 -0.7 691,569 + SO0673 0.53 +2.9 691,584 + SO0673 0.54 +1.8 691,584 + SO0673 0.54 +0.5 691,584 + SO0673 0.54 +0.5 691,584 + SO0673 0.54 +2.1 691,584 + SO0673 0.54 +1.9 691,584 + SO0673 0.54 +1.4 691,584 + SO0673 0.54 +0.8 691,584 + SO0673 0.54 -2.8 691,584 + SO0673 0.54 -1.2 691,584 + SO0673 0.54 -1.0 691,584 + SO0673 0.54 +0.0 691,592 - SO0673 0.55 -1.9 691,592 - SO0673 0.55 -1.2 691,592 - SO0673 0.55 +3.1 691,592 - SO0673 0.55 +0.4 691,592 - SO0673 0.55 +0.2 691,592 - SO0673 0.55 +2.6 691,592 - SO0673 0.55 -2.5 691,592 - SO0673 0.55 +2.6 691,592 - SO0673 0.55 -2.4 691,592 - SO0673 0.55 -0.1 691,614 - SO0673 0.57 +0.7 691,620 + SO0673 0.57 -2.8 691,620 + SO0673 0.57 -1.5 691,630 + SO0673 0.58 -2.9 691,642 - SO0673 0.59 -0.9 691,642 - SO0673 0.59 +2.5 691,827 + SO0673 0.74 -1.0 691,827 + SO0673 0.74 -1.6 691,828 + SO0673 0.74 +0.8 691,835 - SO0673 0.74 +2.0 691,835 - SO0673 0.74 -1.0 691,835 - SO0673 0.74 -1.2 691,845 - SO0673 0.75 -3.4 691,860 - SO0673 0.76 -0.2 691,860 - SO0673 0.76 -3.3 691,934 - SO0673 0.82 -1.0 691,979 - SO0673 0.86 -1.3 692,022 + SO0673 0.89 -0.4 692,022 + SO0673 0.89 -0.4 692,022 + SO0673 0.89 -1.6 692,030 - SO0673 0.90 -0.1 692,030 - SO0673 0.90 -0.9 692,031 - SO0673 0.90 +0.6 692,033 - -0.6 692,064 + -1.5 692,065 + -0.4 692,072 - +0.9 692,079 - +0.8 692,106 - -0.4 692,135 + +2.0 692,135 + -2.4 692,142 + -1.6 692,158 + +0.5 692,159 + -1.0 692,167 - +0.1 692,181 + -1.1 692,181 + +1.1 692,185 - -0.1 692,187 + -0.0 692,189 - -1.6 692,189 - +1.2 692,191 + +0.6 692,204 - -0.0 692,209 + +1.0 692,217 - -0.6 692,217 - -1.0 692,232 - -0.4 692,242 - -1.8 692,257 - +0.6 692,287 - -0.6 692,289 + -2.0 692,318 + +1.9 692,318 + +0.3 692,326 + +0.5 692,340 + +1.9 692,350 + +0.5 692,479 + SO0674 0.21 -0.1 692,527 + SO0674 0.25 +1.3 692,535 - SO0674 0.26 -2.1 692,548 + SO0674 0.27 +0.5 692,574 + SO0674 0.29 +0.2 692,587 - SO0674 0.30 +1.0 692,621 + SO0674 0.33 +2.3 692,624 + SO0674 0.33 -2.1 692,629 + SO0674 0.34 +1.5 692,637 - SO0674 0.34 -0.1 692,637 - SO0674 0.34 +0.2 692,637 - SO0674 0.34 -3.0 692,637 - SO0674 0.34 -0.1 692,689 - SO0674 0.39 +3.5 692,735 - SO0674 0.43 -1.1 692,740 - SO0674 0.43 -1.5 692,746 - SO0674 0.44 -1.5 692,804 - SO0674 0.49 -1.5 692,811 - SO0674 0.49 +0.5 692,827 - SO0674 0.51 -1.7 692,917 + SO0674 0.58 -0.5 692,917 + SO0674 0.58 -0.6 692,925 - SO0674 0.59 +0.1 692,925 - SO0674 0.59 +0.5 693,018 + SO0674 0.67 +1.0 693,108 + SO0674 0.75 -2.4 693,116 - SO0674 0.75 -0.2 693,142 + SO0674 0.78 +0.0 693,149 + SO0674 0.78 +0.9
Or see this region's nucleotide sequence