Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09690

Experiment: 2'-Deoxyinosine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09680 and BWI76_RS09685 are separated by 10 nucleotidesBWI76_RS09685 and BWI76_RS09690 are separated by 1 nucleotidesBWI76_RS09690 and BWI76_RS09695 are separated by 274 nucleotides BWI76_RS09680: BWI76_RS09680 - dimethyl sulfoxide reductase subunit A, at 2,028,693 to 2,031,131 _RS09680 BWI76_RS09685: BWI76_RS09685 - dimethylsulfoxide reductase, chain B, at 2,031,142 to 2,031,759 _RS09685 BWI76_RS09690: BWI76_RS09690 - dimethyl sulfoxide reductase, at 2,031,761 to 2,032,624 _RS09690 BWI76_RS09695: BWI76_RS09695 - MFS transporter, at 2,032,899 to 2,034,047 _RS09695 Position (kb) 2031 2032 2033Strain fitness (log2 ratio) -1 0 1at 2030.994 kb on - strandat 2030.998 kb on - strandat 2030.998 kb on - strandat 2031.012 kb on - strandat 2031.140 kb on - strandat 2031.752 kb on - strandat 2031.861 kb on - strand, within BWI76_RS09690at 2032.470 kb on - strand, within BWI76_RS09690at 2032.503 kb on - strand, within BWI76_RS09690at 2032.643 kb on + strandat 2032.881 kb on + strandat 2032.889 kb on + strandat 2032.906 kb on + strandat 2032.920 kb on + strandat 2033.157 kb on + strand, within BWI76_RS09695at 2033.255 kb on + strand, within BWI76_RS09695at 2033.485 kb on + strand, within BWI76_RS09695

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 10 mM (C)
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2,030,994 - -0.5
2,030,998 - +0.3
2,030,998 - +0.2
2,031,012 - -0.6
2,031,140 - -0.0
2,031,752 - -1.0
2,031,861 - BWI76_RS09690 0.12 -1.3
2,032,470 - BWI76_RS09690 0.82 -0.4
2,032,503 - BWI76_RS09690 0.86 -0.9
2,032,643 + -0.1
2,032,881 + -0.4
2,032,889 + +0.7
2,032,906 + +0.5
2,032,920 + +0.3
2,033,157 + BWI76_RS09695 0.22 +0.7
2,033,255 + BWI76_RS09695 0.31 -0.3
2,033,485 + BWI76_RS09695 0.51 -0.5

Or see this region's nucleotide sequence