Experiment: LB; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0492 and SO0493 are separated by 73 nucleotides SO0493 and SO0493.1 are separated by 295 nucleotides SO0493.1 and SO0494 are separated by 657 nucleotides
SO0492: SO0492 - hypothetical flavoprotein oxygenases (NCBI ptt file), at 516,765 to 517,394
SO0492
SO0493: SO0493 - hypothetical protein (NCBI ptt file), at 517,468 to 517,599
SO0493
SO0493.1: SO0493.1 - hypothetical protein (NCBI ptt file), at 517,895 to 518,122
SO0493.1
SO0494: SO0494 - ISSod1, transposase OrfA (NCBI ptt file), at 518,780 to 519,070
SO0494
Position (kb) 517
518
519 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 516.950 kb on - strand, within SO0492 at 516.986 kb on - strand, within SO0492 at 517.124 kb on + strand, within SO0492 at 517.129 kb on + strand, within SO0492 at 517.150 kb on - strand, within SO0492 at 517.199 kb on + strand, within SO0492 at 517.230 kb on + strand, within SO0492 at 517.230 kb on + strand, within SO0492 at 517.230 kb on + strand, within SO0492 at 517.230 kb on + strand, within SO0492 at 517.238 kb on - strand, within SO0492 at 517.238 kb on - strand, within SO0492 at 517.388 kb on + strand at 517.388 kb on + strand at 517.389 kb on - strand at 517.396 kb on - strand at 517.396 kb on - strand at 517.396 kb on - strand at 517.412 kb on + strand at 517.415 kb on - strand at 517.421 kb on + strand at 517.436 kb on + strand at 517.444 kb on - strand at 517.460 kb on - strand at 517.594 kb on + strand at 517.627 kb on + strand at 517.627 kb on + strand at 517.627 kb on + strand at 517.630 kb on - strand at 517.635 kb on - strand at 517.716 kb on - strand at 517.717 kb on + strand at 517.725 kb on - strand at 517.802 kb on + strand at 517.830 kb on - strand at 517.842 kb on + strand at 517.843 kb on - strand at 517.850 kb on + strand at 517.869 kb on - strand at 517.947 kb on + strand, within SO0493.1 at 517.947 kb on + strand, within SO0493.1 at 517.948 kb on + strand, within SO0493.1 at 517.955 kb on - strand, within SO0493.1 at 517.957 kb on + strand, within SO0493.1 at 517.957 kb on + strand, within SO0493.1 at 517.969 kb on - strand, within SO0493.1 at 517.990 kb on + strand, within SO0493.1 at 517.998 kb on - strand, within SO0493.1 at 517.998 kb on - strand, within SO0493.1 at 517.998 kb on - strand, within SO0493.1 at 517.998 kb on - strand, within SO0493.1 at 518.006 kb on - strand, within SO0493.1 at 518.007 kb on + strand, within SO0493.1 at 518.007 kb on + strand, within SO0493.1 at 518.008 kb on + strand, within SO0493.1 at 518.024 kb on - strand, within SO0493.1 at 518.025 kb on + strand, within SO0493.1 at 518.025 kb on + strand, within SO0493.1 at 518.033 kb on - strand, within SO0493.1 at 518.033 kb on - strand, within SO0493.1 at 518.033 kb on - strand, within SO0493.1 at 518.042 kb on - strand, within SO0493.1 at 518.042 kb on - strand, within SO0493.1 at 518.049 kb on + strand, within SO0493.1 at 518.049 kb on + strand, within SO0493.1 at 518.052 kb on - strand, within SO0493.1 at 518.076 kb on + strand, within SO0493.1 at 518.076 kb on + strand, within SO0493.1 at 518.076 kb on + strand, within SO0493.1 at 518.076 kb on + strand, within SO0493.1 at 518.076 kb on + strand, within SO0493.1 at 518.076 kb on + strand, within SO0493.1 at 518.081 kb on + strand, within SO0493.1 at 518.081 kb on + strand, within SO0493.1 at 518.084 kb on - strand, within SO0493.1 at 518.084 kb on - strand, within SO0493.1 at 518.084 kb on - strand, within SO0493.1 at 518.084 kb on - strand, within SO0493.1 at 518.084 kb on - strand, within SO0493.1 at 518.089 kb on - strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.104 kb on - strand at 518.104 kb on - strand at 518.105 kb on - strand at 518.105 kb on - strand at 518.112 kb on - strand at 518.120 kb on + strand at 518.138 kb on - strand at 518.146 kb on - strand at 518.159 kb on + strand at 518.159 kb on + strand at 518.167 kb on - strand at 518.167 kb on - strand at 518.167 kb on - strand at 518.167 kb on - strand at 518.172 kb on - strand at 518.198 kb on + strand at 518.208 kb on - strand at 518.216 kb on - strand at 518.269 kb on - strand at 518.296 kb on + strand at 518.300 kb on - strand at 518.304 kb on - strand at 518.326 kb on + strand at 518.336 kb on + strand at 518.339 kb on - strand at 518.344 kb on - strand at 518.344 kb on - strand at 518.357 kb on + strand at 518.362 kb on + strand at 518.362 kb on + strand at 518.365 kb on + strand at 518.365 kb on - strand at 518.370 kb on - strand at 518.370 kb on - strand at 518.370 kb on - strand at 518.373 kb on - strand at 518.374 kb on + strand at 518.374 kb on + strand at 518.375 kb on - strand at 518.375 kb on - strand at 518.382 kb on - strand at 518.382 kb on - strand at 518.382 kb on - strand at 518.388 kb on + strand at 518.397 kb on - strand at 518.399 kb on + strand at 518.400 kb on + strand at 518.407 kb on + strand at 518.407 kb on - strand at 518.407 kb on - strand at 518.415 kb on - strand at 518.416 kb on - strand at 518.431 kb on - strand at 518.435 kb on + strand at 518.471 kb on - strand at 518.502 kb on - strand at 518.507 kb on - strand at 518.525 kb on - strand at 518.525 kb on - strand at 518.527 kb on + strand at 518.535 kb on - strand at 518.550 kb on + strand at 518.566 kb on + strand at 518.567 kb on + strand at 518.595 kb on + strand at 518.613 kb on - strand at 518.649 kb on - strand at 518.649 kb on - strand at 518.649 kb on - strand at 518.649 kb on - strand at 518.649 kb on - strand at 518.649 kb on - strand at 518.651 kb on + strand at 518.651 kb on + strand at 518.652 kb on - strand at 518.652 kb on - strand at 518.659 kb on - strand at 518.662 kb on + strand at 518.664 kb on + strand at 518.670 kb on - strand at 518.672 kb on - strand at 518.690 kb on + strand at 518.698 kb on + strand at 518.706 kb on - strand at 518.706 kb on - strand at 518.706 kb on - strand at 518.712 kb on - strand at 518.714 kb on - strand at 518.717 kb on - strand at 518.717 kb on - strand at 518.717 kb on - strand at 518.717 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.728 kb on - strand at 518.728 kb on - strand at 518.728 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB; anaerobic remove 516,950 - SO0492 0.29 -0.0 516,986 - SO0492 0.35 +1.0 517,124 + SO0492 0.57 -0.0 517,129 + SO0492 0.58 +0.8 517,150 - SO0492 0.61 -1.4 517,199 + SO0492 0.69 +1.4 517,230 + SO0492 0.74 +0.7 517,230 + SO0492 0.74 -1.2 517,230 + SO0492 0.74 +1.4 517,230 + SO0492 0.74 -0.8 517,238 - SO0492 0.75 -0.7 517,238 - SO0492 0.75 +0.3 517,388 + -1.7 517,388 + +0.8 517,389 - +0.1 517,396 - +0.6 517,396 - +0.3 517,396 - +0.2 517,412 + +0.4 517,415 - +3.0 517,421 + -1.8 517,436 + +0.4 517,444 - +1.1 517,460 - +0.8 517,594 + -0.8 517,627 + -0.5 517,627 + -2.4 517,627 + +1.6 517,630 - -0.5 517,635 - -2.3 517,716 - -1.6 517,717 + -1.7 517,725 - +0.4 517,802 + +0.5 517,830 - -1.6 517,842 + +0.3 517,843 - -1.8 517,850 + +0.6 517,869 - -3.1 517,947 + SO0493.1 0.23 -0.3 517,947 + SO0493.1 0.23 +0.4 517,948 + SO0493.1 0.23 +0.2 517,955 - SO0493.1 0.26 +1.3 517,957 + SO0493.1 0.27 +0.7 517,957 + SO0493.1 0.27 -1.0 517,969 - SO0493.1 0.32 +0.2 517,990 + SO0493.1 0.42 +1.4 517,998 - SO0493.1 0.45 -2.3 517,998 - SO0493.1 0.45 +1.7 517,998 - SO0493.1 0.45 +0.4 517,998 - SO0493.1 0.45 +1.8 518,006 - SO0493.1 0.49 +1.2 518,007 + SO0493.1 0.49 -1.1 518,007 + SO0493.1 0.49 -3.4 518,008 + SO0493.1 0.50 -2.3 518,024 - SO0493.1 0.57 -1.0 518,025 + SO0493.1 0.57 +0.5 518,025 + SO0493.1 0.57 -0.7 518,033 - SO0493.1 0.61 +0.3 518,033 - SO0493.1 0.61 -3.0 518,033 - SO0493.1 0.61 -0.6 518,042 - SO0493.1 0.64 -1.2 518,042 - SO0493.1 0.64 -3.3 518,049 + SO0493.1 0.68 +0.8 518,049 + SO0493.1 0.68 -1.1 518,052 - SO0493.1 0.69 +0.3 518,076 + SO0493.1 0.79 -1.0 518,076 + SO0493.1 0.79 -0.4 518,076 + SO0493.1 0.79 +0.9 518,076 + SO0493.1 0.79 -0.3 518,076 + SO0493.1 0.79 -0.5 518,076 + SO0493.1 0.79 -0.3 518,081 + SO0493.1 0.82 -1.6 518,081 + SO0493.1 0.82 -1.0 518,084 - SO0493.1 0.83 -0.3 518,084 - SO0493.1 0.83 +0.5 518,084 - SO0493.1 0.83 +0.0 518,084 - SO0493.1 0.83 +0.8 518,084 - SO0493.1 0.83 -2.2 518,089 - SO0493.1 0.85 +0.1 518,091 + SO0493.1 0.86 +0.7 518,091 + SO0493.1 0.86 -0.0 518,091 + SO0493.1 0.86 +0.5 518,091 + SO0493.1 0.86 -2.6 518,091 + SO0493.1 0.86 +1.0 518,091 + SO0493.1 0.86 -1.7 518,091 + SO0493.1 0.86 -0.9 518,091 + SO0493.1 0.86 -2.3 518,091 + SO0493.1 0.86 -1.0 518,091 + SO0493.1 0.86 -2.4 518,091 + SO0493.1 0.86 -0.2 518,091 + SO0493.1 0.86 -1.1 518,091 + SO0493.1 0.86 -2.8 518,091 + SO0493.1 0.86 -1.4 518,091 + SO0493.1 0.86 +0.8 518,091 + SO0493.1 0.86 +0.2 518,091 + SO0493.1 0.86 -1.3 518,099 - SO0493.1 0.89 +0.2 518,099 - SO0493.1 0.89 -0.7 518,099 - SO0493.1 0.89 -2.2 518,099 - SO0493.1 0.89 -0.1 518,099 - SO0493.1 0.89 +0.3 518,099 - SO0493.1 0.89 +1.0 518,099 - SO0493.1 0.89 -1.3 518,099 - SO0493.1 0.89 -0.5 518,099 - SO0493.1 0.89 +0.5 518,099 - SO0493.1 0.89 -0.8 518,104 - +0.5 518,104 - +0.8 518,105 - -1.7 518,105 - +0.6 518,112 - -3.2 518,120 + -3.0 518,138 - -1.3 518,146 - -0.1 518,159 + -2.0 518,159 + -1.3 518,167 - -2.2 518,167 - -0.6 518,167 - -3.4 518,167 - +0.6 518,172 - -1.9 518,198 + +0.2 518,208 - +0.1 518,216 - +0.4 518,269 - -0.2 518,296 + -2.7 518,300 - +0.3 518,304 - -0.4 518,326 + -0.6 518,336 + +1.3 518,339 - -3.6 518,344 - +0.1 518,344 - +0.8 518,357 + +1.0 518,362 + -1.0 518,362 + -1.9 518,365 + -0.5 518,365 - -0.6 518,370 - -1.0 518,370 - -1.9 518,370 - +0.2 518,373 - +0.9 518,374 + +0.9 518,374 + +1.8 518,375 - +0.8 518,375 - +1.1 518,382 - +1.6 518,382 - -0.9 518,382 - -0.0 518,388 + -1.2 518,397 - -0.7 518,399 + +0.5 518,400 + -2.4 518,407 + -0.9 518,407 - +0.4 518,407 - +0.2 518,415 - -2.1 518,416 - +2.5 518,431 - +0.2 518,435 + +0.3 518,471 - +1.8 518,502 - -0.7 518,507 - -0.2 518,525 - -0.2 518,525 - -1.7 518,527 + +0.4 518,535 - -2.0 518,550 + +0.4 518,566 + +0.9 518,567 + +0.2 518,595 + +0.6 518,613 - -0.6 518,649 - -0.8 518,649 - -0.0 518,649 - -1.2 518,649 - +0.0 518,649 - +0.7 518,649 - +0.8 518,651 + -2.6 518,651 + +0.8 518,652 - -2.0 518,652 - +3.1 518,659 - +0.1 518,662 + -2.1 518,664 + -2.6 518,670 - +1.8 518,672 - -0.2 518,690 + +0.7 518,698 + -0.1 518,706 - +0.3 518,706 - +0.8 518,706 - +0.1 518,712 - -0.3 518,714 - -0.9 518,717 - -1.1 518,717 - -2.3 518,717 - -1.2 518,717 - +0.2 518,722 - -0.6 518,722 - +1.5 518,722 - -4.3 518,722 - +0.2 518,722 - -1.2 518,722 - -0.2 518,722 - -0.8 518,722 - -0.1 518,722 - +0.3 518,722 - +0.6 518,722 - -1.3 518,722 - +1.1 518,722 - +0.7 518,722 - +0.5 518,727 - +0.8 518,727 - -3.3 518,727 - +1.3 518,727 - -3.2 518,727 - -0.4 518,727 - -1.9 518,727 - +0.8 518,727 - +1.4 518,727 - +0.2 518,727 - +1.1 518,727 - -0.1 518,727 - +0.8 518,727 - +1.2 518,727 - -0.6 518,727 - +0.1 518,727 - +0.1 518,727 - -0.2 518,727 - +0.4 518,727 - +0.8 518,727 - -3.1 518,727 - -0.6 518,727 - +0.8 518,727 - -0.8 518,727 - -2.8 518,727 - +0.6 518,727 - -1.1 518,727 - -2.2 518,727 - -0.3 518,727 - -0.1 518,727 - +0.3 518,727 - +0.3 518,727 - -0.7 518,727 - +0.3 518,727 - -2.3 518,727 - -2.1 518,727 - +0.5 518,727 - -0.0 518,727 - +1.0 518,727 - -1.8 518,727 - +0.6 518,727 - +1.4 518,727 - -2.9 518,727 - +0.6 518,727 - -0.1 518,727 - +0.8 518,727 - +0.8 518,727 - -0.1 518,727 - +0.4 518,727 - +0.6 518,727 - +0.6 518,727 - -1.7 518,727 - +1.2 518,727 - +0.5 518,727 - -2.3 518,727 - -0.2 518,727 - -0.8 518,727 - -0.3 518,727 - +0.9 518,727 - +0.2 518,727 - -0.6 518,727 - -0.9 518,727 - +1.4 518,727 - -1.3 518,727 - -0.8 518,727 - -2.1 518,727 - +1.8 518,727 - -2.7 518,727 - -2.1 518,727 - -1.1 518,727 - +0.1 518,727 - +0.6 518,727 - +0.0 518,727 - -0.7 518,727 - +1.6 518,727 - +0.7 518,727 - -1.7 518,727 - -1.2 518,727 - -0.3 518,727 - -0.0 518,727 - -0.2 518,727 - -1.2 518,727 - +0.4 518,727 - -0.2 518,727 - -2.2 518,727 - +1.1 518,727 - -0.8 518,727 - -3.1 518,727 - +0.5 518,727 - -1.7 518,727 - -2.1 518,727 - -2.8 518,727 - +3.0 518,727 - -0.6 518,727 - -0.7 518,727 - +1.4 518,727 - -0.2 518,727 - -1.9 518,727 - +0.9 518,727 - -0.4 518,727 - +1.4 518,727 - +0.4 518,727 - -1.1 518,727 - -1.7 518,727 - -2.0 518,727 - +0.4 518,728 - -3.4 518,728 - +0.8 518,728 - +1.2
Or see this region's nucleotide sequence