Strain Fitness in Shewanella oneidensis MR-1 around SO3070

Experiment: LB; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO3069 and asd are separated by 179 nucleotidesasd and pdxB are separated by 2 nucleotides SO3069: SO3069 - conserved hypothetical protein (NCBI ptt file), at 3,185,596 to 3,188,928 SO3069 SO3070: asd - aspartate semialdehyde dehydrogenese (NCBI ptt file), at 3,189,108 to 3,190,124 asd SO3071: pdxB - erythronate-4-phosphate dehydrogenase (NCBI ptt file), at 3,190,127 to 3,191,257 pdxB Position (kb) 3189 3190 3191Strain fitness (log2 ratio) -1 0 1at 3188.235 kb on - strand, within SO3069at 3188.497 kb on - strand, within SO3069at 3188.627 kb on - strandat 3188.627 kb on - strandat 3188.627 kb on - strandat 3188.629 kb on + strandat 3188.659 kb on - strandat 3188.701 kb on - strandat 3189.092 kb on + strandat 3190.193 kb on - strandat 3190.193 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB; anaerobic
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3,188,235 - SO3069 0.79 -0.7
3,188,497 - SO3069 0.87 -1.0
3,188,627 - +0.0
3,188,627 - +0.3
3,188,627 - -1.7
3,188,629 + -0.3
3,188,659 - -0.7
3,188,701 - -1.1
3,189,092 + -1.2
3,190,193 - +0.2
3,190,193 - -1.5

Or see this region's nucleotide sequence