Strain Fitness in Shewanella oneidensis MR-1 around SO1537

Experiment: LB; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO1536 and SO1537 are separated by 123 nucleotidesSO1537 and SO1538 overlap by 29 nucleotides SO1536: SO1536 - conserved hypothetical protein (NCBI ptt file), at 1,610,608 to 1,611,693 SO1536 SO1537: SO1537 - hypothetical protein (NCBI ptt file), at 1,611,817 to 1,611,957 SO1537 SO1538: SO1538 - isocitrate dehydrogenase, NAD-dependent (NCBI ptt file), at 1,611,929 to 1,612,936 SO1538 Position (kb) 1611 1612Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1610.918 kb on - strand, within SO1536at 1610.977 kb on - strand, within SO1536at 1611.078 kb on - strand, within SO1536at 1611.083 kb on - strand, within SO1536at 1611.164 kb on + strand, within SO1536at 1611.266 kb on + strand, within SO1536at 1611.338 kb on + strand, within SO1536at 1611.589 kb on - strandat 1611.679 kb on - strandat 1611.823 kb on - strandat 1611.842 kb on + strand, within SO1537at 1611.944 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB; anaerobic
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1,610,918 - SO1536 0.29 -0.5
1,610,977 - SO1536 0.34 +0.6
1,611,078 - SO1536 0.43 +0.1
1,611,083 - SO1536 0.44 +0.1
1,611,164 + SO1536 0.51 -0.1
1,611,266 + SO1536 0.61 +2.1
1,611,338 + SO1536 0.67 +1.2
1,611,589 - -0.2
1,611,679 - -1.4
1,611,823 - -0.1
1,611,842 + SO1537 0.18 -1.1
1,611,944 - -3.3

Or see this region's nucleotide sequence