Experiment: LB; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mdh and SO0771 are separated by 95 nucleotides SO0771 and SO0772 are separated by 195 nucleotides SO0772 and SO0773 are separated by 212 nucleotides
SO0770: mdh - malate dehydrogenase (NCBI ptt file), at 783,465 to 784,400
mdh
SO0771: SO0771 - conserved hypothetical protein (NCBI ptt file), at 784,496 to 784,885
SO0771
SO0772: SO0772 - oxidoreductase, short chain dehydrogenase/reductase family (NCBI ptt file), at 785,081 to 785,800
SO0772
SO0773: SO0773 - ISSod6, transposase (NCBI ptt file), at 786,013 to 786,771
SO0773
Position (kb) 785
786 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 784.852 kb on - strand at 784.889 kb on + strand at 784.889 kb on + strand at 784.897 kb on - strand at 784.897 kb on - strand at 784.964 kb on + strand at 784.964 kb on + strand at 785.004 kb on + strand at 785.077 kb on + strand at 785.085 kb on - strand at 785.167 kb on + strand, within SO0772 at 785.206 kb on + strand, within SO0772 at 785.220 kb on - strand, within SO0772 at 785.336 kb on + strand, within SO0772 at 785.369 kb on - strand, within SO0772 at 785.527 kb on - strand, within SO0772 at 785.547 kb on - strand, within SO0772 at 785.567 kb on - strand, within SO0772 at 785.572 kb on - strand, within SO0772 at 785.572 kb on - strand, within SO0772 at 785.572 kb on - strand, within SO0772 at 785.632 kb on + strand, within SO0772 at 785.644 kb on - strand, within SO0772
Per-strain Table
Position Strand Gene LocusTag Fraction LB; anaerobic remove 784,852 - +5.1 784,889 + +1.0 784,889 + -3.1 784,897 - -0.6 784,897 - -0.9 784,964 + -0.3 784,964 + +1.0 785,004 + +0.5 785,077 + +1.4 785,085 - -0.4 785,167 + SO0772 0.12 +0.8 785,206 + SO0772 0.17 +0.3 785,220 - SO0772 0.19 +1.3 785,336 + SO0772 0.35 +1.9 785,369 - SO0772 0.40 +1.5 785,527 - SO0772 0.62 -0.8 785,547 - SO0772 0.65 -1.4 785,567 - SO0772 0.68 +0.6 785,572 - SO0772 0.68 -0.4 785,572 - SO0772 0.68 -0.2 785,572 - SO0772 0.68 +2.4 785,632 + SO0772 0.77 +0.9 785,644 - SO0772 0.78 -2.0
Or see this region's nucleotide sequence