Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3232

Experiment: KB with Anabasine Hydrochloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3231 and Psyr_3232 are separated by 80 nucleotidesPsyr_3232 and Psyr_3233 are separated by 250 nucleotidesPsyr_3233 and Psyr_3234 are separated by 19 nucleotides Psyr_3231: Psyr_3231 - sugar transferase, at 3,870,074 to 3,871,483 _3231 Psyr_3232: Psyr_3232 - Polysaccharide export protein, at 3,871,564 to 3,872,652 _3232 Psyr_3233: Psyr_3233 - FMN reductase, at 3,872,903 to 3,873,484 _3233 Psyr_3234: Psyr_3234 - Lysine exporter protein (LYSE/YGGA), at 3,873,504 to 3,874,112 _3234 Position (kb) 3871 3872 3873Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3870.600 kb on - strand, within Psyr_3231at 3870.600 kb on - strand, within Psyr_3231at 3870.655 kb on - strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.715 kb on + strand, within Psyr_3231at 3870.716 kb on - strand, within Psyr_3231at 3871.397 kb on + strandat 3871.397 kb on + strandat 3871.398 kb on - strandat 3871.398 kb on - strandat 3871.398 kb on - strandat 3871.586 kb on + strandat 3871.638 kb on + strandat 3871.638 kb on + strandat 3871.638 kb on + strandat 3871.638 kb on + strandat 3871.639 kb on - strandat 3871.639 kb on - strandat 3871.639 kb on - strandat 3871.639 kb on - strandat 3871.639 kb on - strandat 3871.639 kb on - strandat 3871.639 kb on - strandat 3871.639 kb on - strandat 3871.639 kb on - strandat 3871.639 kb on - strandat 3871.777 kb on + strand, within Psyr_3232at 3871.792 kb on + strand, within Psyr_3232at 3871.813 kb on - strand, within Psyr_3232at 3871.915 kb on + strand, within Psyr_3232at 3871.915 kb on + strand, within Psyr_3232at 3871.916 kb on - strand, within Psyr_3232at 3871.916 kb on - strand, within Psyr_3232at 3871.928 kb on + strand, within Psyr_3232at 3871.928 kb on + strand, within Psyr_3232at 3871.928 kb on + strand, within Psyr_3232at 3871.928 kb on + strand, within Psyr_3232at 3871.928 kb on + strand, within Psyr_3232at 3871.929 kb on - strand, within Psyr_3232at 3871.929 kb on - strand, within Psyr_3232at 3871.929 kb on - strand, within Psyr_3232at 3872.002 kb on + strand, within Psyr_3232at 3872.002 kb on + strand, within Psyr_3232at 3872.002 kb on + strand, within Psyr_3232at 3872.003 kb on - strand, within Psyr_3232at 3872.003 kb on - strand, within Psyr_3232at 3872.038 kb on + strand, within Psyr_3232at 3872.039 kb on - strand, within Psyr_3232at 3872.273 kb on - strand, within Psyr_3232at 3872.308 kb on + strand, within Psyr_3232at 3872.308 kb on + strand, within Psyr_3232at 3872.309 kb on - strand, within Psyr_3232at 3872.309 kb on - strand, within Psyr_3232at 3872.309 kb on - strand, within Psyr_3232at 3872.309 kb on - strand, within Psyr_3232at 3872.431 kb on + strand, within Psyr_3232at 3872.432 kb on - strand, within Psyr_3232at 3872.432 kb on - strand, within Psyr_3232at 3872.432 kb on - strand, within Psyr_3232at 3872.438 kb on + strand, within Psyr_3232at 3872.438 kb on + strand, within Psyr_3232at 3872.438 kb on + strand, within Psyr_3232at 3872.438 kb on + strand, within Psyr_3232at 3872.438 kb on + strand, within Psyr_3232at 3872.438 kb on + strand, within Psyr_3232at 3872.438 kb on + strand, within Psyr_3232at 3872.438 kb on + strand, within Psyr_3232at 3872.625 kb on - strandat 3872.860 kb on + strandat 3872.860 kb on + strandat 3872.860 kb on + strandat 3872.860 kb on + strandat 3872.860 kb on + strandat 3872.860 kb on + strandat 3872.861 kb on - strandat 3872.861 kb on - strandat 3872.861 kb on - strandat 3872.861 kb on - strandat 3872.861 kb on - strandat 3872.861 kb on - strandat 3872.878 kb on + strandat 3872.878 kb on + strandat 3872.878 kb on + strandat 3872.878 kb on + strandat 3872.879 kb on - strandat 3872.879 kb on - strandat 3872.879 kb on - strandat 3872.879 kb on - strandat 3872.879 kb on - strandat 3872.958 kb on + strandat 3872.959 kb on - strandat 3873.004 kb on + strand, within Psyr_3233at 3873.131 kb on + strand, within Psyr_3233at 3873.131 kb on + strand, within Psyr_3233at 3873.131 kb on + strand, within Psyr_3233at 3873.132 kb on - strand, within Psyr_3233at 3873.132 kb on - strand, within Psyr_3233at 3873.354 kb on + strand, within Psyr_3233at 3873.483 kb on - strandat 3873.483 kb on - strandat 3873.570 kb on - strand, within Psyr_3234at 3873.570 kb on - strand, within Psyr_3234at 3873.573 kb on + strand, within Psyr_3234

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Anabasine Hydrochloride 10 mM
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3,870,600 - Psyr_3231 0.37 -0.5
3,870,600 - Psyr_3231 0.37 +1.1
3,870,655 - Psyr_3231 0.41 +0.3
3,870,713 + Psyr_3231 0.45 +0.2
3,870,713 + Psyr_3231 0.45 -0.8
3,870,713 + Psyr_3231 0.45 -0.8
3,870,713 + Psyr_3231 0.45 -1.5
3,870,713 + Psyr_3231 0.45 +0.2
3,870,713 + Psyr_3231 0.45 -0.9
3,870,713 + Psyr_3231 0.45 +1.3
3,870,713 + Psyr_3231 0.45 -0.6
3,870,713 + Psyr_3231 0.45 -0.5
3,870,713 + Psyr_3231 0.45 -2.2
3,870,713 + Psyr_3231 0.45 +0.5
3,870,713 + Psyr_3231 0.45 +0.7
3,870,713 + Psyr_3231 0.45 -0.3
3,870,713 + Psyr_3231 0.45 -1.7
3,870,713 + Psyr_3231 0.45 +0.4
3,870,713 + Psyr_3231 0.45 +2.0
3,870,713 + Psyr_3231 0.45 -0.0
3,870,713 + Psyr_3231 0.45 +0.4
3,870,713 + Psyr_3231 0.45 +0.4
3,870,714 - Psyr_3231 0.45 +1.1
3,870,714 - Psyr_3231 0.45 -2.2
3,870,714 - Psyr_3231 0.45 +0.7
3,870,714 - Psyr_3231 0.45 -0.0
3,870,714 - Psyr_3231 0.45 -0.6
3,870,714 - Psyr_3231 0.45 -0.0
3,870,714 - Psyr_3231 0.45 -0.0
3,870,714 - Psyr_3231 0.45 +0.5
3,870,714 - Psyr_3231 0.45 +1.6
3,870,714 - Psyr_3231 0.45 +1.6
3,870,714 - Psyr_3231 0.45 +0.3
3,870,714 - Psyr_3231 0.45 -0.2
3,870,714 - Psyr_3231 0.45 -0.0
3,870,714 - Psyr_3231 0.45 +0.3
3,870,714 - Psyr_3231 0.45 -0.9
3,870,714 - Psyr_3231 0.45 +0.2
3,870,714 - Psyr_3231 0.45 -1.4
3,870,714 - Psyr_3231 0.45 -0.0
3,870,714 - Psyr_3231 0.45 -0.1
3,870,714 - Psyr_3231 0.45 +1.6
3,870,714 - Psyr_3231 0.45 +0.6
3,870,714 - Psyr_3231 0.45 +0.4
3,870,714 - Psyr_3231 0.45 +0.2
3,870,714 - Psyr_3231 0.45 -0.5
3,870,714 - Psyr_3231 0.45 +0.8
3,870,714 - Psyr_3231 0.45 +0.2
3,870,715 + Psyr_3231 0.45 +0.4
3,870,716 - Psyr_3231 0.46 +0.2
3,871,397 + -0.3
3,871,397 + -0.3
3,871,398 - -0.2
3,871,398 - +0.0
3,871,398 - +1.2
3,871,586 + +0.2
3,871,638 + +0.3
3,871,638 + +0.7
3,871,638 + +1.6
3,871,638 + +0.3
3,871,639 - -0.7
3,871,639 - -0.3
3,871,639 - -0.0
3,871,639 - +0.2
3,871,639 - -0.4
3,871,639 - -0.1
3,871,639 - +1.0
3,871,639 - +0.4
3,871,639 - -1.7
3,871,639 - -0.0
3,871,777 + Psyr_3232 0.20 -1.6
3,871,792 + Psyr_3232 0.21 +1.7
3,871,813 - Psyr_3232 0.23 +1.9
3,871,915 + Psyr_3232 0.32 -0.0
3,871,915 + Psyr_3232 0.32 -1.5
3,871,916 - Psyr_3232 0.32 +0.1
3,871,916 - Psyr_3232 0.32 +0.7
3,871,928 + Psyr_3232 0.33 +0.0
3,871,928 + Psyr_3232 0.33 +0.2
3,871,928 + Psyr_3232 0.33 +0.7
3,871,928 + Psyr_3232 0.33 +0.4
3,871,928 + Psyr_3232 0.33 -0.0
3,871,929 - Psyr_3232 0.34 +0.5
3,871,929 - Psyr_3232 0.34 +0.3
3,871,929 - Psyr_3232 0.34 -0.1
3,872,002 + Psyr_3232 0.40 +0.1
3,872,002 + Psyr_3232 0.40 +0.7
3,872,002 + Psyr_3232 0.40 -0.8
3,872,003 - Psyr_3232 0.40 +0.4
3,872,003 - Psyr_3232 0.40 +1.0
3,872,038 + Psyr_3232 0.44 -0.4
3,872,039 - Psyr_3232 0.44 -0.1
3,872,273 - Psyr_3232 0.65 +0.4
3,872,308 + Psyr_3232 0.68 +0.2
3,872,308 + Psyr_3232 0.68 -0.6
3,872,309 - Psyr_3232 0.68 +0.1
3,872,309 - Psyr_3232 0.68 +0.6
3,872,309 - Psyr_3232 0.68 +0.1
3,872,309 - Psyr_3232 0.68 +0.7
3,872,431 + Psyr_3232 0.80 +0.3
3,872,432 - Psyr_3232 0.80 +0.2
3,872,432 - Psyr_3232 0.80 -1.9
3,872,432 - Psyr_3232 0.80 +0.8
3,872,438 + Psyr_3232 0.80 +0.1
3,872,438 + Psyr_3232 0.80 +0.3
3,872,438 + Psyr_3232 0.80 +0.4
3,872,438 + Psyr_3232 0.80 +0.3
3,872,438 + Psyr_3232 0.80 +0.8
3,872,438 + Psyr_3232 0.80 +1.1
3,872,438 + Psyr_3232 0.80 +0.8
3,872,438 + Psyr_3232 0.80 +0.4
3,872,625 - -0.4
3,872,860 + +0.1
3,872,860 + -1.2
3,872,860 + +0.5
3,872,860 + +0.3
3,872,860 + +0.6
3,872,860 + +1.7
3,872,861 - +1.8
3,872,861 - +0.5
3,872,861 - -0.2
3,872,861 - -1.3
3,872,861 - -3.0
3,872,861 - +0.7
3,872,878 + +2.0
3,872,878 + -0.2
3,872,878 + +0.2
3,872,878 + -0.0
3,872,879 - -0.5
3,872,879 - +0.4
3,872,879 - +1.0
3,872,879 - +0.2
3,872,879 - +1.3
3,872,958 + +0.5
3,872,959 - -1.0
3,873,004 + Psyr_3233 0.17 +0.4
3,873,131 + Psyr_3233 0.39 -0.3
3,873,131 + Psyr_3233 0.39 +0.2
3,873,131 + Psyr_3233 0.39 -0.1
3,873,132 - Psyr_3233 0.39 +0.2
3,873,132 - Psyr_3233 0.39 -0.0
3,873,354 + Psyr_3233 0.77 -0.7
3,873,483 - -0.3
3,873,483 - +0.4
3,873,570 - Psyr_3234 0.11 -0.1
3,873,570 - Psyr_3234 0.11 +0.5
3,873,573 + Psyr_3234 0.11 +0.6

Or see this region's nucleotide sequence