Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26665

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS26655 and BWI76_RS26660 are separated by 101 nucleotidesBWI76_RS26660 and BWI76_RS26665 are separated by 237 nucleotidesBWI76_RS26665 and BWI76_RS26670 overlap by 4 nucleotides BWI76_RS26655: BWI76_RS26655 - transcription accessory protein, at 5,517,663 to 5,519,993 _RS26655 BWI76_RS26660: BWI76_RS26660 - transcription elongation factor GreB, at 5,520,095 to 5,520,568 _RS26660 BWI76_RS26665: BWI76_RS26665 - DNA-binding response regulator, at 5,520,806 to 5,521,525 _RS26665 BWI76_RS26670: BWI76_RS26670 - two-component sensor histidine kinase, at 5,521,522 to 5,522,883 _RS26670 Position (kb) 5520 5521 5522Strain fitness (log2 ratio) -2 -1 0 1 2at 5519.819 kb on - strandat 5519.899 kb on - strandat 5519.904 kb on - strandat 5519.926 kb on + strandat 5519.926 kb on + strandat 5519.926 kb on + strandat 5519.934 kb on - strandat 5519.936 kb on + strandat 5519.936 kb on + strandat 5519.944 kb on - strandat 5519.944 kb on - strandat 5519.944 kb on - strandat 5519.944 kb on - strandat 5519.944 kb on - strandat 5519.944 kb on - strandat 5519.944 kb on - strandat 5519.944 kb on - strandat 5519.944 kb on - strandat 5519.949 kb on - strandat 5519.954 kb on - strandat 5520.040 kb on + strandat 5520.177 kb on + strand, within BWI76_RS26660at 5520.223 kb on - strand, within BWI76_RS26660at 5520.366 kb on - strand, within BWI76_RS26660at 5520.467 kb on + strand, within BWI76_RS26660at 5520.467 kb on + strand, within BWI76_RS26660at 5520.509 kb on - strand, within BWI76_RS26660at 5520.541 kb on + strandat 5520.541 kb on + strandat 5520.549 kb on - strandat 5520.549 kb on - strandat 5520.581 kb on - strandat 5520.582 kb on - strandat 5520.595 kb on + strandat 5520.603 kb on - strandat 5520.663 kb on + strandat 5520.664 kb on + strandat 5520.719 kb on + strandat 5520.729 kb on - strandat 5520.788 kb on + strandat 5520.795 kb on - strandat 5520.795 kb on - strandat 5520.796 kb on + strandat 5520.797 kb on - strandat 5520.851 kb on - strandat 5520.862 kb on + strandat 5520.896 kb on - strand, within BWI76_RS26665at 5520.917 kb on + strand, within BWI76_RS26665at 5520.953 kb on + strand, within BWI76_RS26665at 5521.121 kb on - strand, within BWI76_RS26665at 5521.340 kb on + strand, within BWI76_RS26665at 5521.512 kb on + strandat 5521.520 kb on - strandat 5521.573 kb on - strandat 5521.585 kb on - strandat 5521.595 kb on - strandat 5521.621 kb on - strandat 5521.646 kb on + strandat 5521.654 kb on - strandat 5521.666 kb on + strand, within BWI76_RS26670at 5521.813 kb on + strand, within BWI76_RS26670at 5521.821 kb on - strand, within BWI76_RS26670at 5521.821 kb on - strand, within BWI76_RS26670at 5521.958 kb on + strand, within BWI76_RS26670at 5521.966 kb on - strand, within BWI76_RS26670at 5521.966 kb on - strand, within BWI76_RS26670at 5522.084 kb on + strand, within BWI76_RS26670at 5522.150 kb on + strand, within BWI76_RS26670at 5522.177 kb on + strand, within BWI76_RS26670at 5522.219 kb on + strand, within BWI76_RS26670at 5522.269 kb on - strand, within BWI76_RS26670at 5522.349 kb on + strand, within BWI76_RS26670at 5522.357 kb on - strand, within BWI76_RS26670at 5522.400 kb on - strand, within BWI76_RS26670at 5522.421 kb on + strand, within BWI76_RS26670at 5522.422 kb on - strand, within BWI76_RS26670at 5522.439 kb on - strand, within BWI76_RS26670

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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5,519,819 - +0.5
5,519,899 - -2.0
5,519,904 - +0.2
5,519,926 + +0.5
5,519,926 + -1.1
5,519,926 + -1.7
5,519,934 - -0.5
5,519,936 + -0.0
5,519,936 + +0.5
5,519,944 - -0.0
5,519,944 - -0.3
5,519,944 - +0.7
5,519,944 - -0.1
5,519,944 - -0.3
5,519,944 - -0.0
5,519,944 - +0.1
5,519,944 - +0.4
5,519,944 - -0.3
5,519,949 - -0.6
5,519,954 - -0.4
5,520,040 + -0.1
5,520,177 + BWI76_RS26660 0.17 -0.0
5,520,223 - BWI76_RS26660 0.27 +0.4
5,520,366 - BWI76_RS26660 0.57 -0.5
5,520,467 + BWI76_RS26660 0.78 +1.2
5,520,467 + BWI76_RS26660 0.78 -0.6
5,520,509 - BWI76_RS26660 0.87 +0.0
5,520,541 + +0.1
5,520,541 + +0.5
5,520,549 - +0.2
5,520,549 - +0.6
5,520,581 - -0.3
5,520,582 - -0.0
5,520,595 + -0.2
5,520,603 - +0.2
5,520,663 + +0.3
5,520,664 + +2.2
5,520,719 + +0.1
5,520,729 - +0.2
5,520,788 + -0.4
5,520,795 - +2.6
5,520,795 - -0.2
5,520,796 + -0.2
5,520,797 - +1.0
5,520,851 - -1.1
5,520,862 + -1.0
5,520,896 - BWI76_RS26665 0.12 -0.6
5,520,917 + BWI76_RS26665 0.15 +1.2
5,520,953 + BWI76_RS26665 0.20 +1.4
5,521,121 - BWI76_RS26665 0.44 +1.1
5,521,340 + BWI76_RS26665 0.74 -0.7
5,521,512 + +1.0
5,521,520 - +0.5
5,521,573 - +1.0
5,521,585 - +0.5
5,521,595 - +1.0
5,521,621 - -0.1
5,521,646 + -0.6
5,521,654 - +0.6
5,521,666 + BWI76_RS26670 0.11 +1.2
5,521,813 + BWI76_RS26670 0.21 +1.2
5,521,821 - BWI76_RS26670 0.22 +0.6
5,521,821 - BWI76_RS26670 0.22 +0.3
5,521,958 + BWI76_RS26670 0.32 +0.7
5,521,966 - BWI76_RS26670 0.33 +0.4
5,521,966 - BWI76_RS26670 0.33 -0.2
5,522,084 + BWI76_RS26670 0.41 +0.2
5,522,150 + BWI76_RS26670 0.46 +0.8
5,522,177 + BWI76_RS26670 0.48 +0.2
5,522,219 + BWI76_RS26670 0.51 +0.4
5,522,269 - BWI76_RS26670 0.55 +0.1
5,522,349 + BWI76_RS26670 0.61 +0.1
5,522,357 - BWI76_RS26670 0.61 -0.0
5,522,400 - BWI76_RS26670 0.64 +0.4
5,522,421 + BWI76_RS26670 0.66 -0.2
5,522,422 - BWI76_RS26670 0.66 +0.2
5,522,439 - BWI76_RS26670 0.67 -0.4

Or see this region's nucleotide sequence