Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23885

Experiment: 2-Deoxyadenosine 4 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS23880 and BWI76_RS23885 are separated by 420 nucleotidesBWI76_RS23885 and BWI76_RS23890 are separated by 10 nucleotides BWI76_RS23880: BWI76_RS23880 - Aminomethyltransferase (EC 2.1.2.10) (from data), at 4,983,901 to 4,984,995 _RS23880 BWI76_RS23885: BWI76_RS23885 - 2-octaprenylphenol hydroxylase, at 4,985,416 to 4,986,618 _RS23885 BWI76_RS23890: BWI76_RS23890 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 4,986,629 to 4,987,807 _RS23890 Position (kb) 4985 4986 4987Strain fitness (log2 ratio) -1 0 1at 4984.496 kb on + strand, within BWI76_RS23880at 4984.504 kb on - strand, within BWI76_RS23880at 4984.511 kb on + strand, within BWI76_RS23880at 4984.620 kb on - strand, within BWI76_RS23880at 4984.912 kb on - strandat 4985.013 kb on + strandat 4985.134 kb on + strandat 4985.142 kb on - strandat 4985.142 kb on - strandat 4985.188 kb on + strandat 4985.216 kb on + strandat 4985.666 kb on + strand, within BWI76_RS23885at 4985.691 kb on - strand, within BWI76_RS23885

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
remove
4,984,496 + BWI76_RS23880 0.54 +0.3
4,984,504 - BWI76_RS23880 0.55 +0.7
4,984,511 + BWI76_RS23880 0.56 +1.1
4,984,620 - BWI76_RS23880 0.66 -0.7
4,984,912 - +0.3
4,985,013 + +0.4
4,985,134 + +0.5
4,985,142 - -1.2
4,985,142 - -0.9
4,985,188 + +0.1
4,985,216 + +0.9
4,985,666 + BWI76_RS23885 0.21 -0.9
4,985,691 - BWI76_RS23885 0.23 +1.1

Or see this region's nucleotide sequence