Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23580

Experiment: 2-Deoxyadenosine 4 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS23570 and BWI76_RS23575 are separated by 10 nucleotidesBWI76_RS23575 and BWI76_RS23580 are separated by 12 nucleotidesBWI76_RS23580 and BWI76_RS23585 are separated by 14 nucleotides BWI76_RS23570: BWI76_RS23570 - fimbrial protein, at 4,914,988 to 4,917,624 _RS23570 BWI76_RS23575: BWI76_RS23575 - hypothetical protein, at 4,917,635 to 4,918,165 _RS23575 BWI76_RS23580: BWI76_RS23580 - hypothetical protein, at 4,918,178 to 4,918,678 _RS23580 BWI76_RS23585: BWI76_RS23585 - minor component of type 1 fimbriae, at 4,918,693 to 4,919,655 _RS23585 Position (kb) 4918 4919Strain fitness (log2 ratio) -2 -1 0 1 2at 4917.231 kb on - strand, within BWI76_RS23570at 4917.280 kb on - strand, within BWI76_RS23570at 4917.320 kb on - strand, within BWI76_RS23570at 4917.325 kb on - strand, within BWI76_RS23570at 4917.325 kb on - strand, within BWI76_RS23570at 4917.329 kb on + strand, within BWI76_RS23570at 4917.483 kb on - strandat 4917.508 kb on + strandat 4917.656 kb on + strandat 4917.682 kb on - strandat 4918.012 kb on + strand, within BWI76_RS23575at 4918.053 kb on + strand, within BWI76_RS23575at 4918.063 kb on + strandat 4918.088 kb on + strand, within BWI76_RS23575at 4918.196 kb on - strandat 4918.204 kb on - strandat 4918.346 kb on - strand, within BWI76_RS23580at 4918.346 kb on - strand, within BWI76_RS23580at 4918.463 kb on - strand, within BWI76_RS23580at 4918.492 kb on + strand, within BWI76_RS23580at 4918.661 kb on + strandat 4918.737 kb on + strandat 4918.737 kb on + strandat 4918.737 kb on + strandat 4918.737 kb on + strandat 4918.737 kb on + strandat 4918.740 kb on - strandat 4918.745 kb on - strandat 4918.745 kb on - strandat 4918.745 kb on - strandat 4918.745 kb on - strandat 4918.745 kb on - strandat 4918.745 kb on - strandat 4918.745 kb on - strandat 4918.785 kb on + strandat 4918.869 kb on + strand, within BWI76_RS23585at 4918.891 kb on + strand, within BWI76_RS23585at 4918.987 kb on + strand, within BWI76_RS23585at 4919.144 kb on + strand, within BWI76_RS23585at 4919.162 kb on - strand, within BWI76_RS23585at 4919.165 kb on - strand, within BWI76_RS23585at 4919.329 kb on - strand, within BWI76_RS23585at 4919.373 kb on - strand, within BWI76_RS23585at 4919.404 kb on - strand, within BWI76_RS23585at 4919.488 kb on - strand, within BWI76_RS23585at 4919.501 kb on + strand, within BWI76_RS23585at 4919.658 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
remove
4,917,231 - BWI76_RS23570 0.85 -0.1
4,917,280 - BWI76_RS23570 0.87 +0.2
4,917,320 - BWI76_RS23570 0.88 -0.2
4,917,325 - BWI76_RS23570 0.89 -0.3
4,917,325 - BWI76_RS23570 0.89 +0.5
4,917,329 + BWI76_RS23570 0.89 +0.4
4,917,483 - -0.2
4,917,508 + +1.2
4,917,656 + -0.4
4,917,682 - -0.2
4,918,012 + BWI76_RS23575 0.71 +0.5
4,918,053 + BWI76_RS23575 0.79 +0.3
4,918,063 + +0.0
4,918,088 + BWI76_RS23575 0.85 +0.2
4,918,196 - +0.2
4,918,204 - +0.1
4,918,346 - BWI76_RS23580 0.34 +0.8
4,918,346 - BWI76_RS23580 0.34 -0.1
4,918,463 - BWI76_RS23580 0.57 +1.3
4,918,492 + BWI76_RS23580 0.63 +0.4
4,918,661 + -2.0
4,918,737 + +0.1
4,918,737 + +0.4
4,918,737 + -0.2
4,918,737 + -0.2
4,918,737 + +0.5
4,918,740 - -0.0
4,918,745 - -0.2
4,918,745 - +0.6
4,918,745 - +1.8
4,918,745 - -0.3
4,918,745 - +0.2
4,918,745 - +0.8
4,918,745 - -0.4
4,918,785 + +0.3
4,918,869 + BWI76_RS23585 0.18 -0.4
4,918,891 + BWI76_RS23585 0.21 -0.2
4,918,987 + BWI76_RS23585 0.31 +0.7
4,919,144 + BWI76_RS23585 0.47 +0.3
4,919,162 - BWI76_RS23585 0.49 -0.5
4,919,165 - BWI76_RS23585 0.49 +0.1
4,919,329 - BWI76_RS23585 0.66 +0.5
4,919,373 - BWI76_RS23585 0.71 -0.1
4,919,404 - BWI76_RS23585 0.74 +0.4
4,919,488 - BWI76_RS23585 0.83 +0.5
4,919,501 + BWI76_RS23585 0.84 -0.2
4,919,658 + +0.2

Or see this region's nucleotide sequence