Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19695

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19690 and BWI76_RS19695 are separated by 173 nucleotidesBWI76_RS19695 and BWI76_RS19700 are separated by 95 nucleotidesBWI76_RS19700 and BWI76_RS19705 are separated by 1 nucleotides BWI76_RS19690: BWI76_RS19690 - LysR family transcriptional regulator, at 4,115,262 to 4,116,128 _RS19690 BWI76_RS19695: BWI76_RS19695 - membrane protein, at 4,116,302 to 4,117,351 _RS19695 BWI76_RS19700: BWI76_RS19700 - deoxyribonuclease IV, at 4,117,447 to 4,118,304 _RS19700 BWI76_RS19705: BWI76_RS19705 - kinase, at 4,118,306 to 4,119,394 _RS19705 Position (kb) 4116 4117 4118Strain fitness (log2 ratio) -2 -1 0 1at 4115.558 kb on - strand, within BWI76_RS19690at 4116.025 kb on - strand, within BWI76_RS19690at 4116.174 kb on - strandat 4117.220 kb on + strand, within BWI76_RS19695at 4118.021 kb on + strand, within BWI76_RS19700at 4118.029 kb on - strand, within BWI76_RS19700at 4118.087 kb on + strand, within BWI76_RS19700at 4118.324 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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4,115,558 - BWI76_RS19690 0.34 +0.2
4,116,025 - BWI76_RS19690 0.88 -0.6
4,116,174 - -0.5
4,117,220 + BWI76_RS19695 0.87 +0.5
4,118,021 + BWI76_RS19700 0.67 -0.2
4,118,029 - BWI76_RS19700 0.68 -0.8
4,118,087 + BWI76_RS19700 0.75 +0.7
4,118,324 - -1.8

Or see this region's nucleotide sequence