Experiment: 2-Deoxyadenosine 4 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19610 and BWI76_RS19615 are separated by 124 nucleotides BWI76_RS19615 and BWI76_RS19620 are separated by 82 nucleotides BWI76_RS19620 and BWI76_RS19625 overlap by 4 nucleotides
BWI76_RS19610: BWI76_RS19610 - Cytidine deaminase (EC 3.5.4.5) (from data) , at 4,099,162 to 4,100,046
_RS19610
BWI76_RS19615: BWI76_RS19615 - vancomycin high temperature exclusion protein, at 4,100,171 to 4,100,887
_RS19615
BWI76_RS19620: BWI76_RS19620 - hypothetical protein, at 4,100,970 to 4,101,629
_RS19620
BWI76_RS19625: BWI76_RS19625 - DUF4810 domain-containing protein, at 4,101,626 to 4,101,982
_RS19625
Position (kb)
4100
4101 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4099.183 kb on + strand at 4099.257 kb on + strand, within BWI76_RS19610 at 4099.486 kb on + strand, within BWI76_RS19610 at 4099.495 kb on - strand, within BWI76_RS19610 at 4099.535 kb on + strand, within BWI76_RS19610 at 4099.536 kb on + strand, within BWI76_RS19610 at 4099.593 kb on - strand, within BWI76_RS19610 at 4099.674 kb on + strand, within BWI76_RS19610 at 4100.043 kb on - strand at 4100.075 kb on - strand at 4100.335 kb on + strand, within BWI76_RS19615 at 4100.396 kb on + strand, within BWI76_RS19615 at 4100.665 kb on + strand, within BWI76_RS19615 at 4100.830 kb on + strand at 4100.830 kb on + strand at 4100.830 kb on + strand at 4100.998 kb on - strand at 4101.014 kb on + strand at 4101.042 kb on - strand, within BWI76_RS19620 at 4101.287 kb on + strand, within BWI76_RS19620 at 4101.288 kb on - strand, within BWI76_RS19620 at 4101.295 kb on - strand, within BWI76_RS19620 at 4101.348 kb on + strand, within BWI76_RS19620 at 4101.387 kb on + strand, within BWI76_RS19620 at 4101.445 kb on - strand, within BWI76_RS19620 at 4101.450 kb on - strand, within BWI76_RS19620 at 4101.517 kb on - strand, within BWI76_RS19620 at 4101.531 kb on - strand, within BWI76_RS19620 at 4101.531 kb on - strand, within BWI76_RS19620 at 4101.531 kb on - strand, within BWI76_RS19620 at 4101.543 kb on + strand, within BWI76_RS19620 at 4101.574 kb on - strand at 4101.576 kb on + strand at 4101.581 kb on + strand at 4101.581 kb on + strand at 4101.581 kb on + strand at 4101.582 kb on - strand at 4101.584 kb on - strand at 4101.589 kb on - strand at 4101.589 kb on - strand at 4101.589 kb on - strand at 4101.589 kb on - strand at 4101.589 kb on - strand at 4101.589 kb on - strand at 4101.602 kb on - strand at 4101.701 kb on - strand, within BWI76_RS19625 at 4101.722 kb on - strand, within BWI76_RS19625 at 4101.722 kb on - strand, within BWI76_RS19625 at 4101.725 kb on + strand, within BWI76_RS19625 at 4101.772 kb on + strand, within BWI76_RS19625 at 4101.780 kb on - strand, within BWI76_RS19625 at 4101.780 kb on - strand, within BWI76_RS19625 at 4101.780 kb on - strand, within BWI76_RS19625 at 4101.780 kb on - strand, within BWI76_RS19625 at 4101.781 kb on + strand, within BWI76_RS19625 at 4101.788 kb on - strand, within BWI76_RS19625 at 4101.800 kb on - strand, within BWI76_RS19625 at 4101.849 kb on + strand, within BWI76_RS19625 at 4101.849 kb on + strand at 4101.849 kb on + strand, within BWI76_RS19625 at 4101.849 kb on + strand, within BWI76_RS19625 at 4101.851 kb on + strand, within BWI76_RS19625 at 4101.857 kb on - strand, within BWI76_RS19625 at 4101.857 kb on - strand, within BWI76_RS19625 at 4101.857 kb on - strand, within BWI76_RS19625 at 4101.857 kb on - strand, within BWI76_RS19625 at 4101.857 kb on - strand, within BWI76_RS19625 at 4101.861 kb on + strand, within BWI76_RS19625 at 4101.861 kb on + strand, within BWI76_RS19625 at 4101.861 kb on + strand, within BWI76_RS19625 at 4101.876 kb on + strand, within BWI76_RS19625
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C) remove 4,099,183 + +0.2 4,099,257 + BWI76_RS19610 0.11 +0.5 4,099,486 + BWI76_RS19610 0.37 +0.7 4,099,495 - BWI76_RS19610 0.38 -0.7 4,099,535 + BWI76_RS19610 0.42 -0.3 4,099,536 + BWI76_RS19610 0.42 +0.3 4,099,593 - BWI76_RS19610 0.49 -0.5 4,099,674 + BWI76_RS19610 0.58 +0.4 4,100,043 - -0.7 4,100,075 - -0.3 4,100,335 + BWI76_RS19615 0.23 +0.4 4,100,396 + BWI76_RS19615 0.31 -0.1 4,100,665 + BWI76_RS19615 0.69 +1.9 4,100,830 + -0.2 4,100,830 + -0.4 4,100,830 + +1.2 4,100,998 - -0.1 4,101,014 + +0.5 4,101,042 - BWI76_RS19620 0.11 +0.7 4,101,287 + BWI76_RS19620 0.48 +0.8 4,101,288 - BWI76_RS19620 0.48 +0.8 4,101,295 - BWI76_RS19620 0.49 +0.4 4,101,348 + BWI76_RS19620 0.57 -0.3 4,101,387 + BWI76_RS19620 0.63 -1.0 4,101,445 - BWI76_RS19620 0.72 -0.4 4,101,450 - BWI76_RS19620 0.73 +0.2 4,101,517 - BWI76_RS19620 0.83 +1.6 4,101,531 - BWI76_RS19620 0.85 +0.1 4,101,531 - BWI76_RS19620 0.85 +0.3 4,101,531 - BWI76_RS19620 0.85 -0.7 4,101,543 + BWI76_RS19620 0.87 +0.2 4,101,574 - -0.2 4,101,576 + -0.8 4,101,581 + +1.9 4,101,581 + -0.3 4,101,581 + -1.8 4,101,582 - -0.1 4,101,584 - +0.4 4,101,589 - -0.2 4,101,589 - -0.7 4,101,589 - +0.2 4,101,589 - +0.4 4,101,589 - +0.1 4,101,589 - +0.5 4,101,602 - -0.3 4,101,701 - BWI76_RS19625 0.21 +0.2 4,101,722 - BWI76_RS19625 0.27 -1.4 4,101,722 - BWI76_RS19625 0.27 -1.0 4,101,725 + BWI76_RS19625 0.28 +0.2 4,101,772 + BWI76_RS19625 0.41 -0.2 4,101,780 - BWI76_RS19625 0.43 +1.0 4,101,780 - BWI76_RS19625 0.43 -0.6 4,101,780 - BWI76_RS19625 0.43 +0.5 4,101,780 - BWI76_RS19625 0.43 +0.8 4,101,781 + BWI76_RS19625 0.43 +0.1 4,101,788 - BWI76_RS19625 0.45 +0.4 4,101,800 - BWI76_RS19625 0.49 +0.6 4,101,849 + BWI76_RS19625 0.62 +0.2 4,101,849 + -0.8 4,101,849 + BWI76_RS19625 0.62 -0.0 4,101,849 + BWI76_RS19625 0.62 -1.7 4,101,851 + BWI76_RS19625 0.63 +0.2 4,101,857 - BWI76_RS19625 0.65 +0.0 4,101,857 - BWI76_RS19625 0.65 +0.7 4,101,857 - BWI76_RS19625 0.65 +0.2 4,101,857 - BWI76_RS19625 0.65 -0.2 4,101,857 - BWI76_RS19625 0.65 -0.7 4,101,861 + BWI76_RS19625 0.66 +1.3 4,101,861 + BWI76_RS19625 0.66 -1.1 4,101,861 + BWI76_RS19625 0.66 +1.8 4,101,876 + BWI76_RS19625 0.70 -1.2
Or see this region's nucleotide sequence