Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18485

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18480 and BWI76_RS18485 are separated by 157 nucleotidesBWI76_RS18485 and BWI76_RS18490 are separated by 126 nucleotidesBWI76_RS18490 and BWI76_RS18495 overlap by 53 nucleotides BWI76_RS18480: BWI76_RS18480 - LysR family transcriptional regulator, at 3,832,124 to 3,833,044 _RS18480 BWI76_RS18485: BWI76_RS18485 - LysR family transcriptional regulator, at 3,833,202 to 3,834,104 _RS18485 BWI76_RS18490: BWI76_RS18490 - cupin, at 3,834,231 to 3,834,638 _RS18490 BWI76_RS18495: BWI76_RS18495 - hypothetical protein, at 3,834,586 to 3,835,530 _RS18495 Position (kb) 3833 3834 3835Strain fitness (log2 ratio) -1 0 1at 3832.220 kb on - strand, within BWI76_RS18480at 3832.375 kb on - strand, within BWI76_RS18480at 3832.409 kb on - strand, within BWI76_RS18480at 3832.434 kb on + strand, within BWI76_RS18480at 3832.687 kb on + strand, within BWI76_RS18480at 3832.787 kb on - strand, within BWI76_RS18480at 3833.272 kb on + strandat 3833.441 kb on - strand, within BWI76_RS18485at 3833.643 kb on - strand, within BWI76_RS18485at 3833.758 kb on + strand, within BWI76_RS18485at 3833.962 kb on - strand, within BWI76_RS18485at 3833.980 kb on - strand, within BWI76_RS18485at 3833.995 kb on - strand, within BWI76_RS18485at 3833.995 kb on - strand, within BWI76_RS18485at 3834.632 kb on + strandat 3834.632 kb on + strandat 3834.632 kb on + strandat 3834.632 kb on + strandat 3834.680 kb on - strandat 3834.853 kb on - strand, within BWI76_RS18495at 3834.853 kb on - strand, within BWI76_RS18495at 3834.894 kb on + strand, within BWI76_RS18495at 3834.973 kb on - strand, within BWI76_RS18495

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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3,832,220 - BWI76_RS18480 0.10 +0.1
3,832,375 - BWI76_RS18480 0.27 +0.1
3,832,409 - BWI76_RS18480 0.31 +0.5
3,832,434 + BWI76_RS18480 0.34 +0.1
3,832,687 + BWI76_RS18480 0.61 +0.6
3,832,787 - BWI76_RS18480 0.72 -0.1
3,833,272 + +0.0
3,833,441 - BWI76_RS18485 0.26 -0.5
3,833,643 - BWI76_RS18485 0.49 +0.8
3,833,758 + BWI76_RS18485 0.62 +0.2
3,833,962 - BWI76_RS18485 0.84 +1.6
3,833,980 - BWI76_RS18485 0.86 +0.9
3,833,995 - BWI76_RS18485 0.88 +0.4
3,833,995 - BWI76_RS18485 0.88 +0.8
3,834,632 + -0.3
3,834,632 + -0.7
3,834,632 + +0.3
3,834,632 + -0.1
3,834,680 - +1.7
3,834,853 - BWI76_RS18495 0.28 +0.7
3,834,853 - BWI76_RS18495 0.28 +0.0
3,834,894 + BWI76_RS18495 0.33 -0.1
3,834,973 - BWI76_RS18495 0.41 -0.3

Or see this region's nucleotide sequence