Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16690

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16685 and BWI76_RS16690 overlap by 1 nucleotidesBWI76_RS16690 and BWI76_RS16695 overlap by 4 nucleotidesBWI76_RS16695 and BWI76_RS16700 overlap by 4 nucleotides BWI76_RS16685: BWI76_RS16685 - peptide ABC transporter permease, at 3,453,642 to 3,454,601 _RS16685 BWI76_RS16690: BWI76_RS16690 - peptide ABC transporter permease, at 3,454,601 to 3,455,548 _RS16690 BWI76_RS16695: BWI76_RS16695 - dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein, at 3,455,545 to 3,456,525 _RS16695 BWI76_RS16700: BWI76_RS16700 - ABC transporter ATP-binding protein, at 3,456,522 to 3,457,487 _RS16700 Position (kb) 3454 3455 3456Strain fitness (log2 ratio) -1 0 1 2at 3453.767 kb on - strand, within BWI76_RS16685at 3454.365 kb on - strand, within BWI76_RS16685at 3454.377 kb on - strandat 3454.628 kb on - strandat 3454.952 kb on - strand, within BWI76_RS16690at 3455.202 kb on + strand, within BWI76_RS16690at 3455.311 kb on + strand, within BWI76_RS16690at 3455.667 kb on - strand, within BWI76_RS16695at 3455.711 kb on - strand, within BWI76_RS16695at 3455.942 kb on + strandat 3455.950 kb on - strand, within BWI76_RS16695at 3456.156 kb on + strand, within BWI76_RS16695at 3456.200 kb on - strand, within BWI76_RS16695at 3456.226 kb on + strand, within BWI76_RS16695at 3456.433 kb on + strandat 3456.441 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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3,453,767 - BWI76_RS16685 0.13 -0.4
3,454,365 - BWI76_RS16685 0.75 +0.2
3,454,377 - -1.0
3,454,628 - -0.3
3,454,952 - BWI76_RS16690 0.37 -0.2
3,455,202 + BWI76_RS16690 0.63 +1.9
3,455,311 + BWI76_RS16690 0.75 +0.8
3,455,667 - BWI76_RS16695 0.12 -0.1
3,455,711 - BWI76_RS16695 0.17 -0.7
3,455,942 + +0.6
3,455,950 - BWI76_RS16695 0.41 -1.0
3,456,156 + BWI76_RS16695 0.62 -0.0
3,456,200 - BWI76_RS16695 0.67 -0.2
3,456,226 + BWI76_RS16695 0.69 +0.2
3,456,433 + +0.1
3,456,441 - +0.6

Or see this region's nucleotide sequence