Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16240

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16235 and BWI76_RS16240 are separated by 990 nucleotidesBWI76_RS16240 and BWI76_RS16245 overlap by 93 nucleotidesBWI76_RS16245 and BWI76_RS16250 are separated by 213 nucleotides BWI76_RS16235: BWI76_RS16235 - membrane protein, at 3,367,609 to 3,367,944 _RS16235 BWI76_RS16240: BWI76_RS16240 - anti-adapter protein IraM, at 3,368,935 to 3,369,282 _RS16240 BWI76_RS16245: BWI76_RS16245 - hypothetical protein, at 3,369,190 to 3,369,407 _RS16245 BWI76_RS16250: BWI76_RS16250 - DNA-binding response regulator, at 3,369,621 to 3,370,337 _RS16250 Position (kb) 3368 3369 3370Strain fitness (log2 ratio) -1 0 1 2at 3368.773 kb on - strandat 3368.900 kb on - strandat 3369.038 kb on - strand, within BWI76_RS16240at 3369.064 kb on + strand, within BWI76_RS16240at 3369.155 kb on + strand, within BWI76_RS16240at 3369.169 kb on - strand, within BWI76_RS16240at 3369.219 kb on + strandat 3369.249 kb on + strandat 3369.257 kb on - strandat 3369.270 kb on - strandat 3369.270 kb on - strandat 3369.272 kb on + strandat 3369.277 kb on + strandat 3369.277 kb on + strandat 3369.277 kb on + strandat 3369.284 kb on + strand, within BWI76_RS16245at 3369.285 kb on - strand, within BWI76_RS16245at 3369.285 kb on - strand, within BWI76_RS16245at 3369.285 kb on - strand, within BWI76_RS16245at 3369.285 kb on - strand, within BWI76_RS16245at 3369.302 kb on - strand, within BWI76_RS16245at 3369.314 kb on - strand, within BWI76_RS16245at 3369.314 kb on - strand, within BWI76_RS16245at 3369.321 kb on + strand, within BWI76_RS16245at 3369.329 kb on - strand, within BWI76_RS16245at 3369.329 kb on - strand, within BWI76_RS16245at 3369.413 kb on + strandat 3369.425 kb on + strandat 3369.425 kb on + strandat 3369.425 kb on + strandat 3369.430 kb on + strandat 3369.433 kb on - strandat 3369.438 kb on - strandat 3369.438 kb on - strandat 3369.438 kb on - strandat 3369.438 kb on - strandat 3369.530 kb on - strandat 3369.556 kb on - strandat 3369.736 kb on + strand, within BWI76_RS16250at 3369.994 kb on + strand, within BWI76_RS16250at 3369.994 kb on - strand, within BWI76_RS16250at 3370.203 kb on + strand, within BWI76_RS16250at 3370.203 kb on + strand, within BWI76_RS16250

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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3,368,773 - -1.2
3,368,900 - +0.6
3,369,038 - BWI76_RS16240 0.30 +1.3
3,369,064 + BWI76_RS16240 0.37 +0.2
3,369,155 + BWI76_RS16240 0.63 +0.7
3,369,169 - BWI76_RS16240 0.67 +0.8
3,369,219 + +0.9
3,369,249 + -0.2
3,369,257 - -0.1
3,369,270 - -0.1
3,369,270 - -0.4
3,369,272 + +2.5
3,369,277 + +0.2
3,369,277 + +1.4
3,369,277 + +0.3
3,369,284 + BWI76_RS16245 0.43 -0.3
3,369,285 - BWI76_RS16245 0.44 -0.2
3,369,285 - BWI76_RS16245 0.44 -1.3
3,369,285 - BWI76_RS16245 0.44 +0.2
3,369,285 - BWI76_RS16245 0.44 -0.3
3,369,302 - BWI76_RS16245 0.51 -0.9
3,369,314 - BWI76_RS16245 0.57 +0.1
3,369,314 - BWI76_RS16245 0.57 +0.3
3,369,321 + BWI76_RS16245 0.60 +1.2
3,369,329 - BWI76_RS16245 0.64 +1.8
3,369,329 - BWI76_RS16245 0.64 -0.0
3,369,413 + +0.7
3,369,425 + -0.7
3,369,425 + +0.7
3,369,425 + -0.0
3,369,430 + -0.0
3,369,433 - -0.2
3,369,438 - +0.0
3,369,438 - +0.0
3,369,438 - -1.1
3,369,438 - +0.6
3,369,530 - +1.4
3,369,556 - +1.1
3,369,736 + BWI76_RS16250 0.16 -0.6
3,369,994 + BWI76_RS16250 0.52 +0.6
3,369,994 - BWI76_RS16250 0.52 +0.4
3,370,203 + BWI76_RS16250 0.81 -0.1
3,370,203 + BWI76_RS16250 0.81 +0.1

Or see this region's nucleotide sequence