Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15990

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15980 and BWI76_RS15985 overlap by 20 nucleotidesBWI76_RS15985 and BWI76_RS15990 are separated by 577 nucleotidesBWI76_RS15990 and BWI76_RS15995 are separated by 4 nucleotides BWI76_RS15980: BWI76_RS15980 - lysine transporter LysE, at 3,315,317 to 3,315,579 _RS15980 BWI76_RS15985: BWI76_RS15985 - LysR family transcriptional regulator, at 3,315,560 to 3,315,784 _RS15985 BWI76_RS15990: BWI76_RS15990 - serine protease, at 3,316,362 to 3,317,174 _RS15990 BWI76_RS15995: BWI76_RS15995 - bifunctional diguanylate cyclase/phosphodiesterase, at 3,317,179 to 3,319,335 _RS15995 Position (kb) 3316 3317 3318Strain fitness (log2 ratio) -1 0 1at 3315.433 kb on - strand, within BWI76_RS15980at 3315.584 kb on + strand, within BWI76_RS15985at 3315.602 kb on + strand, within BWI76_RS15985at 3315.610 kb on - strand, within BWI76_RS15985at 3315.746 kb on - strand, within BWI76_RS15985at 3315.951 kb on + strandat 3315.968 kb on - strandat 3316.079 kb on - strandat 3316.079 kb on - strandat 3316.364 kb on + strandat 3316.364 kb on + strandat 3316.372 kb on - strandat 3316.415 kb on + strandat 3316.540 kb on - strand, within BWI76_RS15990at 3316.672 kb on - strand, within BWI76_RS15990at 3316.805 kb on + strand, within BWI76_RS15990at 3316.967 kb on - strand, within BWI76_RS15990at 3317.078 kb on - strand, within BWI76_RS15990at 3317.647 kb on - strand, within BWI76_RS15995

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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3,315,433 - BWI76_RS15980 0.44 -0.3
3,315,584 + BWI76_RS15985 0.11 +0.0
3,315,602 + BWI76_RS15985 0.19 -0.3
3,315,610 - BWI76_RS15985 0.22 -0.4
3,315,746 - BWI76_RS15985 0.83 +0.4
3,315,951 + +0.3
3,315,968 - +0.3
3,316,079 - -1.1
3,316,079 - -0.0
3,316,364 + +1.1
3,316,364 + +0.3
3,316,372 - +0.6
3,316,415 + +0.5
3,316,540 - BWI76_RS15990 0.22 +0.4
3,316,672 - BWI76_RS15990 0.38 -1.3
3,316,805 + BWI76_RS15990 0.54 +0.1
3,316,967 - BWI76_RS15990 0.74 +0.6
3,317,078 - BWI76_RS15990 0.88 +1.1
3,317,647 - BWI76_RS15995 0.22 -0.5

Or see this region's nucleotide sequence