Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13955

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13945 and BWI76_RS13950 are separated by 46 nucleotidesBWI76_RS13950 and BWI76_RS13955 are separated by 43 nucleotidesBWI76_RS13955 and BWI76_RS13960 are separated by 346 nucleotides BWI76_RS13945: BWI76_RS13945 - lysine exporter protein LysE/YggA, at 2,911,708 to 2,912,340 _RS13945 BWI76_RS13950: BWI76_RS13950 - hypothetical protein, at 2,912,387 to 2,913,079 _RS13950 BWI76_RS13955: BWI76_RS13955 - hypothetical protein, at 2,913,123 to 2,913,725 _RS13955 BWI76_RS13960: BWI76_RS13960 - urea ABC transporter periplasmic protein, at 2,914,072 to 2,915,130 _RS13960 Position (kb) 2913 2914Strain fitness (log2 ratio) -1 0 1at 2912.356 kb on + strandat 2912.671 kb on + strand, within BWI76_RS13950at 2912.740 kb on + strand, within BWI76_RS13950at 2912.823 kb on - strand, within BWI76_RS13950at 2912.962 kb on + strand, within BWI76_RS13950at 2912.980 kb on - strand, within BWI76_RS13950at 2913.054 kb on - strandat 2913.300 kb on + strand, within BWI76_RS13955at 2913.662 kb on - strand, within BWI76_RS13955at 2913.747 kb on + strandat 2913.947 kb on + strandat 2913.953 kb on + strandat 2913.993 kb on - strandat 2914.099 kb on + strandat 2914.175 kb on - strandat 2914.626 kb on + strand, within BWI76_RS13960at 2914.686 kb on - strand, within BWI76_RS13960at 2914.688 kb on - strand, within BWI76_RS13960

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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2,912,356 + +0.1
2,912,671 + BWI76_RS13950 0.41 -0.0
2,912,740 + BWI76_RS13950 0.51 +0.3
2,912,823 - BWI76_RS13950 0.63 -1.1
2,912,962 + BWI76_RS13950 0.83 -0.3
2,912,980 - BWI76_RS13950 0.86 +0.0
2,913,054 - +0.6
2,913,300 + BWI76_RS13955 0.29 +1.7
2,913,662 - BWI76_RS13955 0.89 +0.9
2,913,747 + -0.3
2,913,947 + +0.6
2,913,953 + -0.0
2,913,993 - +0.3
2,914,099 + -0.8
2,914,175 - +0.1
2,914,626 + BWI76_RS13960 0.52 +0.4
2,914,686 - BWI76_RS13960 0.58 +0.1
2,914,688 - BWI76_RS13960 0.58 -0.6

Or see this region's nucleotide sequence