Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09590

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09585 and BWI76_RS09590 are separated by 384 nucleotidesBWI76_RS09590 and BWI76_RS09595 are separated by 172 nucleotides BWI76_RS09585: BWI76_RS09585 - aquaporin, at 2,004,570 to 2,005,265 _RS09585 BWI76_RS09590: BWI76_RS09590 - ATP-dependent OLD family endonuclease, at 2,005,650 to 2,007,308 _RS09590 BWI76_RS09595: BWI76_RS09595 - macrolide transporter subunit MacA, at 2,007,481 to 2,008,596 _RS09595 Position (kb) 2005 2006 2007 2008Strain fitness (log2 ratio) -1 0 1at 2004.746 kb on + strand, within BWI76_RS09585at 2004.840 kb on + strand, within BWI76_RS09585at 2004.840 kb on + strand, within BWI76_RS09585at 2004.840 kb on + strand, within BWI76_RS09585at 2004.848 kb on - strand, within BWI76_RS09585at 2004.901 kb on + strand, within BWI76_RS09585at 2004.901 kb on + strand, within BWI76_RS09585at 2004.936 kb on + strand, within BWI76_RS09585at 2004.942 kb on - strand, within BWI76_RS09585at 2004.965 kb on - strand, within BWI76_RS09585at 2004.965 kb on - strand, within BWI76_RS09585at 2004.966 kb on + strand, within BWI76_RS09585at 2004.974 kb on - strand, within BWI76_RS09585at 2004.979 kb on - strand, within BWI76_RS09585at 2005.059 kb on + strand, within BWI76_RS09585at 2005.061 kb on - strand, within BWI76_RS09585at 2005.066 kb on - strand, within BWI76_RS09585at 2005.113 kb on + strand, within BWI76_RS09585at 2005.113 kb on + strand, within BWI76_RS09585at 2005.113 kb on + strand, within BWI76_RS09585at 2005.113 kb on + strand, within BWI76_RS09585at 2005.121 kb on - strand, within BWI76_RS09585at 2005.143 kb on - strand, within BWI76_RS09585at 2005.179 kb on + strand, within BWI76_RS09585at 2005.183 kb on + strand, within BWI76_RS09585at 2005.211 kb on - strandat 2005.212 kb on + strandat 2005.247 kb on - strandat 2005.247 kb on - strandat 2005.350 kb on - strandat 2005.360 kb on - strandat 2005.371 kb on + strandat 2005.544 kb on + strandat 2005.545 kb on + strandat 2005.545 kb on + strandat 2005.549 kb on + strandat 2005.558 kb on - strandat 2005.598 kb on + strandat 2005.598 kb on + strandat 2005.616 kb on - strandat 2005.624 kb on - strandat 2005.644 kb on + strandat 2005.644 kb on + strandat 2005.644 kb on + strandat 2005.652 kb on - strandat 2005.664 kb on + strandat 2005.672 kb on - strandat 2005.687 kb on + strandat 2005.777 kb on + strandat 2005.781 kb on + strandat 2005.795 kb on - strandat 2005.856 kb on - strand, within BWI76_RS09590at 2005.945 kb on + strand, within BWI76_RS09590at 2006.059 kb on + strand, within BWI76_RS09590at 2006.103 kb on - strand, within BWI76_RS09590at 2006.264 kb on - strand, within BWI76_RS09590at 2006.326 kb on - strand, within BWI76_RS09590at 2006.654 kb on + strand, within BWI76_RS09590at 2006.665 kb on - strand, within BWI76_RS09590at 2006.788 kb on + strand, within BWI76_RS09590at 2006.938 kb on + strand, within BWI76_RS09590at 2007.241 kb on + strandat 2007.303 kb on + strandat 2007.311 kb on - strandat 2007.332 kb on + strandat 2007.340 kb on - strandat 2007.360 kb on - strandat 2007.360 kb on - strandat 2007.375 kb on - strandat 2007.459 kb on + strandat 2007.545 kb on - strandat 2007.616 kb on + strand, within BWI76_RS09595at 2007.915 kb on - strand, within BWI76_RS09595at 2008.219 kb on + strand, within BWI76_RS09595

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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2,004,746 + BWI76_RS09585 0.25 +0.6
2,004,840 + BWI76_RS09585 0.39 +0.3
2,004,840 + BWI76_RS09585 0.39 -0.1
2,004,840 + BWI76_RS09585 0.39 -0.4
2,004,848 - BWI76_RS09585 0.40 +0.1
2,004,901 + BWI76_RS09585 0.48 +0.2
2,004,901 + BWI76_RS09585 0.48 +0.1
2,004,936 + BWI76_RS09585 0.53 -0.6
2,004,942 - BWI76_RS09585 0.53 -0.4
2,004,965 - BWI76_RS09585 0.57 -1.4
2,004,965 - BWI76_RS09585 0.57 +0.2
2,004,966 + BWI76_RS09585 0.57 -0.0
2,004,974 - BWI76_RS09585 0.58 -0.2
2,004,979 - BWI76_RS09585 0.59 +0.2
2,005,059 + BWI76_RS09585 0.70 +1.2
2,005,061 - BWI76_RS09585 0.71 -0.7
2,005,066 - BWI76_RS09585 0.71 +0.1
2,005,113 + BWI76_RS09585 0.78 +0.5
2,005,113 + BWI76_RS09585 0.78 -1.1
2,005,113 + BWI76_RS09585 0.78 -0.7
2,005,113 + BWI76_RS09585 0.78 +0.3
2,005,121 - BWI76_RS09585 0.79 +0.7
2,005,143 - BWI76_RS09585 0.82 -0.9
2,005,179 + BWI76_RS09585 0.88 -0.8
2,005,183 + BWI76_RS09585 0.88 +0.1
2,005,211 - +0.2
2,005,212 + +0.4
2,005,247 - +0.6
2,005,247 - -0.5
2,005,350 - -0.2
2,005,360 - -1.0
2,005,371 + -0.1
2,005,544 + -0.7
2,005,545 + -0.1
2,005,545 + +0.2
2,005,549 + -0.4
2,005,558 - -0.1
2,005,598 + -0.1
2,005,598 + -0.0
2,005,616 - +0.0
2,005,624 - -0.1
2,005,644 + +0.8
2,005,644 + -0.1
2,005,644 + +0.4
2,005,652 - -1.3
2,005,664 + -0.7
2,005,672 - +0.7
2,005,687 + +0.1
2,005,777 + -0.0
2,005,781 + -0.8
2,005,795 - -0.2
2,005,856 - BWI76_RS09590 0.12 +0.3
2,005,945 + BWI76_RS09590 0.18 +0.4
2,006,059 + BWI76_RS09590 0.25 +0.2
2,006,103 - BWI76_RS09590 0.27 +1.0
2,006,264 - BWI76_RS09590 0.37 +0.9
2,006,326 - BWI76_RS09590 0.41 +0.2
2,006,654 + BWI76_RS09590 0.61 +0.8
2,006,665 - BWI76_RS09590 0.61 +0.4
2,006,788 + BWI76_RS09590 0.69 +1.3
2,006,938 + BWI76_RS09590 0.78 -0.1
2,007,241 + +0.9
2,007,303 + +0.0
2,007,311 - +0.0
2,007,332 + +0.1
2,007,340 - -1.0
2,007,360 - +0.5
2,007,360 - -0.1
2,007,375 - +0.1
2,007,459 + +1.7
2,007,545 - +0.4
2,007,616 + BWI76_RS09595 0.12 +0.6
2,007,915 - BWI76_RS09595 0.39 -0.3
2,008,219 + BWI76_RS09595 0.66 +0.7

Or see this region's nucleotide sequence