Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09255

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09245 and BWI76_RS09250 are separated by 114 nucleotidesBWI76_RS09250 and BWI76_RS09255 are separated by 398 nucleotidesBWI76_RS09255 and BWI76_RS09260 are separated by 36 nucleotides BWI76_RS09245: BWI76_RS09245 - bacteriophage replication gene A protein, at 1,946,108 to 1,948,519 _RS09245 BWI76_RS09250: BWI76_RS09250 - hypothetical protein, at 1,948,634 to 1,948,819 _RS09250 BWI76_RS09255: BWI76_RS09255 - hypothetical protein, at 1,949,218 to 1,950,090 _RS09255 BWI76_RS09260: BWI76_RS09260 - portal vertex-like protein, at 1,950,127 to 1,951,152 _RS09260 Position (kb) 1949 1950 1951Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1948.671 kb on + strand, within BWI76_RS09250at 1948.714 kb on - strand, within BWI76_RS09250at 1948.776 kb on + strand, within BWI76_RS09250at 1948.776 kb on + strand, within BWI76_RS09250at 1948.776 kb on + strand, within BWI76_RS09250at 1948.789 kb on - strand, within BWI76_RS09250at 1948.791 kb on + strand, within BWI76_RS09250at 1948.796 kb on + strand, within BWI76_RS09250at 1948.799 kb on - strand, within BWI76_RS09250at 1948.842 kb on + strandat 1948.877 kb on + strandat 1948.927 kb on + strandat 1948.964 kb on + strandat 1948.971 kb on - strandat 1949.002 kb on + strandat 1949.035 kb on - strandat 1949.039 kb on - strandat 1949.039 kb on - strandat 1949.039 kb on - strandat 1949.093 kb on - strandat 1949.098 kb on - strandat 1949.233 kb on + strandat 1949.243 kb on + strandat 1949.243 kb on + strandat 1949.244 kb on + strandat 1949.251 kb on + strandat 1949.337 kb on + strand, within BWI76_RS09255at 1949.337 kb on + strand, within BWI76_RS09255at 1949.512 kb on + strand, within BWI76_RS09255at 1949.791 kb on + strandat 1949.989 kb on + strand, within BWI76_RS09255at 1950.025 kb on + strandat 1950.025 kb on + strandat 1950.025 kb on + strandat 1950.025 kb on + strandat 1950.025 kb on + strandat 1950.026 kb on + strandat 1950.026 kb on + strandat 1950.033 kb on + strandat 1950.033 kb on + strandat 1950.033 kb on - strandat 1950.041 kb on + strandat 1950.041 kb on + strandat 1950.041 kb on + strandat 1950.041 kb on + strandat 1950.249 kb on - strand, within BWI76_RS09260at 1950.249 kb on - strand, within BWI76_RS09260at 1950.249 kb on - strand, within BWI76_RS09260at 1950.251 kb on + strand, within BWI76_RS09260at 1950.252 kb on - strandat 1950.252 kb on - strand, within BWI76_RS09260at 1950.259 kb on - strand, within BWI76_RS09260at 1950.259 kb on - strand, within BWI76_RS09260at 1950.260 kb on - strand, within BWI76_RS09260at 1950.266 kb on + strand, within BWI76_RS09260at 1950.274 kb on - strand, within BWI76_RS09260at 1950.274 kb on - strand, within BWI76_RS09260at 1950.274 kb on - strand, within BWI76_RS09260at 1950.274 kb on - strand, within BWI76_RS09260at 1950.275 kb on - strand, within BWI76_RS09260at 1950.280 kb on - strand, within BWI76_RS09260at 1950.284 kb on - strand, within BWI76_RS09260at 1950.284 kb on - strand, within BWI76_RS09260at 1950.289 kb on - strand, within BWI76_RS09260at 1950.292 kb on - strand, within BWI76_RS09260at 1950.297 kb on - strand, within BWI76_RS09260at 1950.314 kb on + strand, within BWI76_RS09260at 1950.314 kb on + strand, within BWI76_RS09260at 1950.314 kb on + strand, within BWI76_RS09260at 1950.322 kb on - strand, within BWI76_RS09260at 1950.322 kb on - strand, within BWI76_RS09260at 1950.322 kb on - strand, within BWI76_RS09260at 1950.322 kb on - strandat 1950.353 kb on + strand, within BWI76_RS09260at 1950.379 kb on - strand, within BWI76_RS09260at 1950.432 kb on - strand, within BWI76_RS09260at 1950.432 kb on - strand, within BWI76_RS09260at 1950.494 kb on + strand, within BWI76_RS09260at 1950.499 kb on + strand, within BWI76_RS09260at 1950.499 kb on + strand, within BWI76_RS09260at 1950.565 kb on + strand, within BWI76_RS09260at 1950.596 kb on + strand, within BWI76_RS09260at 1950.602 kb on - strand, within BWI76_RS09260at 1950.604 kb on - strand, within BWI76_RS09260at 1950.725 kb on - strand, within BWI76_RS09260at 1950.940 kb on + strand, within BWI76_RS09260at 1951.038 kb on + strand, within BWI76_RS09260

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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1,948,671 + BWI76_RS09250 0.20 +1.0
1,948,714 - BWI76_RS09250 0.43 -1.4
1,948,776 + BWI76_RS09250 0.76 +0.4
1,948,776 + BWI76_RS09250 0.76 +0.4
1,948,776 + BWI76_RS09250 0.76 +0.4
1,948,789 - BWI76_RS09250 0.83 +0.5
1,948,791 + BWI76_RS09250 0.84 -1.6
1,948,796 + BWI76_RS09250 0.87 +0.3
1,948,799 - BWI76_RS09250 0.89 +0.0
1,948,842 + +0.7
1,948,877 + -1.5
1,948,927 + +0.2
1,948,964 + -2.1
1,948,971 - -1.2
1,949,002 + -0.3
1,949,035 - -0.0
1,949,039 - +0.1
1,949,039 - +0.1
1,949,039 - +0.3
1,949,093 - +1.4
1,949,098 - -0.3
1,949,233 + +0.1
1,949,243 + +1.0
1,949,243 + +0.2
1,949,244 + -0.4
1,949,251 + -0.5
1,949,337 + BWI76_RS09255 0.14 +0.4
1,949,337 + BWI76_RS09255 0.14 +3.3
1,949,512 + BWI76_RS09255 0.34 +0.6
1,949,791 + +0.7
1,949,989 + BWI76_RS09255 0.88 +0.2
1,950,025 + +0.4
1,950,025 + -0.4
1,950,025 + +1.2
1,950,025 + +0.4
1,950,025 + -0.6
1,950,026 + +0.1
1,950,026 + -0.6
1,950,033 + -0.5
1,950,033 + -0.5
1,950,033 - +1.1
1,950,041 + +0.7
1,950,041 + -0.1
1,950,041 + +0.8
1,950,041 + +0.7
1,950,249 - BWI76_RS09260 0.12 -0.0
1,950,249 - BWI76_RS09260 0.12 -1.8
1,950,249 - BWI76_RS09260 0.12 +0.1
1,950,251 + BWI76_RS09260 0.12 -0.3
1,950,252 - +1.3
1,950,252 - BWI76_RS09260 0.12 +0.7
1,950,259 - BWI76_RS09260 0.13 -0.3
1,950,259 - BWI76_RS09260 0.13 -0.5
1,950,260 - BWI76_RS09260 0.13 -1.4
1,950,266 + BWI76_RS09260 0.14 +0.4
1,950,274 - BWI76_RS09260 0.14 -0.8
1,950,274 - BWI76_RS09260 0.14 +0.7
1,950,274 - BWI76_RS09260 0.14 +0.3
1,950,274 - BWI76_RS09260 0.14 -1.1
1,950,275 - BWI76_RS09260 0.14 -0.0
1,950,280 - BWI76_RS09260 0.15 -1.3
1,950,284 - BWI76_RS09260 0.15 +0.3
1,950,284 - BWI76_RS09260 0.15 +0.2
1,950,289 - BWI76_RS09260 0.16 -0.2
1,950,292 - BWI76_RS09260 0.16 +1.0
1,950,297 - BWI76_RS09260 0.17 +0.7
1,950,314 + BWI76_RS09260 0.18 -0.1
1,950,314 + BWI76_RS09260 0.18 +0.3
1,950,314 + BWI76_RS09260 0.18 -0.4
1,950,322 - BWI76_RS09260 0.19 -0.8
1,950,322 - BWI76_RS09260 0.19 +0.0
1,950,322 - BWI76_RS09260 0.19 +0.7
1,950,322 - -0.3
1,950,353 + BWI76_RS09260 0.22 +0.3
1,950,379 - BWI76_RS09260 0.25 +0.5
1,950,432 - BWI76_RS09260 0.30 +0.2
1,950,432 - BWI76_RS09260 0.30 +0.9
1,950,494 + BWI76_RS09260 0.36 +0.2
1,950,499 + BWI76_RS09260 0.36 -0.8
1,950,499 + BWI76_RS09260 0.36 -0.6
1,950,565 + BWI76_RS09260 0.43 +0.4
1,950,596 + BWI76_RS09260 0.46 -0.3
1,950,602 - BWI76_RS09260 0.46 -0.7
1,950,604 - BWI76_RS09260 0.46 -0.6
1,950,725 - BWI76_RS09260 0.58 -0.8
1,950,940 + BWI76_RS09260 0.79 +0.1
1,951,038 + BWI76_RS09260 0.89 -0.5

Or see this region's nucleotide sequence