Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06665

Experiment: 2-Deoxyadenosine 4 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS06660 and BWI76_RS06665 are separated by 87 nucleotidesBWI76_RS06665 and BWI76_RS06670 are separated by 92 nucleotidesBWI76_RS06670 and BWI76_RS06675 are separated by 46 nucleotides BWI76_RS06660: BWI76_RS06660 - GntR family transcriptional regulator with, at 1,396,628 to 1,398,055 _RS06660 BWI76_RS06665: BWI76_RS06665 - membrane protein, at 1,398,143 to 1,398,757 _RS06665 BWI76_RS06670: BWI76_RS06670 - hypothetical protein, at 1,398,850 to 1,399,203 _RS06670 BWI76_RS06675: BWI76_RS06675 - nickel/cobalt efflux protein RcnA, at 1,399,250 to 1,400,083 _RS06675 Position (kb) 1398 1399Strain fitness (log2 ratio) -1 0 1 2at 1397.398 kb on + strand, within BWI76_RS06660at 1397.434 kb on - strand, within BWI76_RS06660at 1397.626 kb on - strand, within BWI76_RS06660at 1397.718 kb on - strand, within BWI76_RS06660at 1397.818 kb on - strand, within BWI76_RS06660at 1397.937 kb on + strandat 1398.136 kb on - strandat 1398.187 kb on - strandat 1398.298 kb on + strand, within BWI76_RS06665at 1398.472 kb on + strand, within BWI76_RS06665at 1398.775 kb on - strandat 1398.898 kb on + strand, within BWI76_RS06670at 1398.964 kb on + strand, within BWI76_RS06670at 1398.972 kb on - strand, within BWI76_RS06670at 1399.025 kb on + strand, within BWI76_RS06670at 1399.045 kb on + strand, within BWI76_RS06670at 1399.058 kb on + strand, within BWI76_RS06670at 1399.070 kb on + strand, within BWI76_RS06670at 1399.078 kb on - strand, within BWI76_RS06670at 1399.178 kb on + strandat 1399.186 kb on - strandat 1399.301 kb on - strandat 1399.444 kb on + strand, within BWI76_RS06675at 1399.452 kb on - strand, within BWI76_RS06675at 1399.489 kb on + strand, within BWI76_RS06675at 1399.554 kb on + strand, within BWI76_RS06675at 1399.554 kb on + strand, within BWI76_RS06675at 1399.554 kb on + strand, within BWI76_RS06675at 1399.562 kb on - strand, within BWI76_RS06675at 1399.640 kb on + strand, within BWI76_RS06675

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
remove
1,397,398 + BWI76_RS06660 0.54 +0.5
1,397,434 - BWI76_RS06660 0.56 +1.5
1,397,626 - BWI76_RS06660 0.70 +0.5
1,397,718 - BWI76_RS06660 0.76 +0.7
1,397,818 - BWI76_RS06660 0.83 +0.1
1,397,937 + -0.1
1,398,136 - +0.3
1,398,187 - +0.1
1,398,298 + BWI76_RS06665 0.25 +0.5
1,398,472 + BWI76_RS06665 0.53 +2.1
1,398,775 - +0.0
1,398,898 + BWI76_RS06670 0.14 -0.3
1,398,964 + BWI76_RS06670 0.32 -0.2
1,398,972 - BWI76_RS06670 0.34 +0.2
1,399,025 + BWI76_RS06670 0.49 -0.5
1,399,045 + BWI76_RS06670 0.55 -0.0
1,399,058 + BWI76_RS06670 0.59 +0.3
1,399,070 + BWI76_RS06670 0.62 +0.8
1,399,078 - BWI76_RS06670 0.64 +0.7
1,399,178 + +0.3
1,399,186 - +0.5
1,399,301 - -0.1
1,399,444 + BWI76_RS06675 0.23 -0.6
1,399,452 - BWI76_RS06675 0.24 +0.6
1,399,489 + BWI76_RS06675 0.29 -0.9
1,399,554 + BWI76_RS06675 0.36 -0.1
1,399,554 + BWI76_RS06675 0.36 -0.8
1,399,554 + BWI76_RS06675 0.36 -0.9
1,399,562 - BWI76_RS06675 0.37 -0.2
1,399,640 + BWI76_RS06675 0.47 +0.4

Or see this region's nucleotide sequence