Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06245

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06240 and BWI76_RS06245 are separated by 123 nucleotidesBWI76_RS06245 and BWI76_RS06250 are separated by 152 nucleotides BWI76_RS06240: BWI76_RS06240 - branched-chain amino acid transport system 2 carrier protein BrnQ, at 1,310,162 to 1,311,481 _RS06240 BWI76_RS06245: BWI76_RS06245 - proline-specific permease ProY, at 1,311,605 to 1,312,975 _RS06245 BWI76_RS06250: BWI76_RS06250 - alpha-glycosidase, at 1,313,128 to 1,314,945 _RS06250 Position (kb) 1311 1312 1313Strain fitness (log2 ratio) -1 0 1 2at 1311.041 kb on + strand, within BWI76_RS06240at 1311.058 kb on - strand, within BWI76_RS06240at 1311.155 kb on + strand, within BWI76_RS06240at 1311.318 kb on - strand, within BWI76_RS06240at 1311.352 kb on + strandat 1311.352 kb on + strandat 1311.386 kb on + strandat 1311.396 kb on + strandat 1311.487 kb on + strandat 1311.490 kb on + strandat 1311.490 kb on + strandat 1311.492 kb on + strandat 1311.552 kb on + strandat 1311.681 kb on + strandat 1312.024 kb on - strand, within BWI76_RS06245at 1312.316 kb on - strand, within BWI76_RS06245at 1312.316 kb on - strand, within BWI76_RS06245at 1312.472 kb on + strand, within BWI76_RS06245at 1312.971 kb on - strandat 1313.071 kb on + strandat 1313.089 kb on + strandat 1313.123 kb on - strandat 1313.145 kb on + strandat 1313.556 kb on + strandat 1313.584 kb on + strand, within BWI76_RS06250at 1313.584 kb on + strand, within BWI76_RS06250

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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1,311,041 + BWI76_RS06240 0.67 +1.0
1,311,058 - BWI76_RS06240 0.68 +0.1
1,311,155 + BWI76_RS06240 0.75 -0.5
1,311,318 - BWI76_RS06240 0.88 +0.2
1,311,352 + +0.4
1,311,352 + -0.8
1,311,386 + +0.4
1,311,396 + +0.4
1,311,487 + -0.2
1,311,490 + +0.4
1,311,490 + +1.8
1,311,492 + -0.2
1,311,552 + +0.1
1,311,681 + -0.9
1,312,024 - BWI76_RS06245 0.31 +0.5
1,312,316 - BWI76_RS06245 0.52 +1.3
1,312,316 - BWI76_RS06245 0.52 +0.2
1,312,472 + BWI76_RS06245 0.63 +0.0
1,312,971 - -0.1
1,313,071 + -0.8
1,313,089 + -0.7
1,313,123 - +0.8
1,313,145 + -0.9
1,313,556 + +0.8
1,313,584 + BWI76_RS06250 0.25 -0.0
1,313,584 + BWI76_RS06250 0.25 +1.0

Or see this region's nucleotide sequence