Experiment: KB with Mexicanolide 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4828 and Psyr_4829 are separated by 113 nucleotides Psyr_4829 and Psyr_4830 are separated by 73 nucleotides Psyr_4830 and Psyr_4831 overlap by 4 nucleotides
Psyr_4828: Psyr_4828 - urocanate hydratase, at 5,730,019 to 5,731,716
_4828
Psyr_4829: Psyr_4829 - Substrate-binding region of ABC-type glycine betaine transport system, at 5,731,830 to 5,732,798
_4829
Psyr_4830: Psyr_4830 - Binding-protein-dependent transport systems inner membrane component, at 5,732,872 to 5,733,723
_4830
Psyr_4831: Psyr_4831 - ABC transporter, at 5,733,720 to 5,734,550
_4831
Position (kb) 5731
5732
5733 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5730.862 kb on + strand, within Psyr_4828 at 5731.020 kb on + strand, within Psyr_4828 at 5731.020 kb on + strand, within Psyr_4828 at 5731.021 kb on - strand, within Psyr_4828 at 5731.021 kb on - strand, within Psyr_4828 at 5731.087 kb on + strand, within Psyr_4828 at 5731.087 kb on + strand, within Psyr_4828 at 5731.087 kb on + strand, within Psyr_4828 at 5731.087 kb on + strand, within Psyr_4828 at 5731.087 kb on + strand, within Psyr_4828 at 5731.087 kb on + strand, within Psyr_4828 at 5731.087 kb on + strand, within Psyr_4828 at 5731.087 kb on + strand, within Psyr_4828 at 5731.087 kb on + strand, within Psyr_4828 at 5731.088 kb on - strand, within Psyr_4828 at 5731.088 kb on - strand, within Psyr_4828 at 5731.088 kb on - strand, within Psyr_4828 at 5731.088 kb on - strand, within Psyr_4828 at 5731.088 kb on - strand, within Psyr_4828 at 5731.088 kb on - strand, within Psyr_4828 at 5731.162 kb on + strand, within Psyr_4828 at 5731.162 kb on + strand, within Psyr_4828 at 5731.162 kb on + strand, within Psyr_4828 at 5731.162 kb on + strand, within Psyr_4828 at 5731.162 kb on + strand, within Psyr_4828 at 5731.162 kb on + strand, within Psyr_4828 at 5731.163 kb on - strand, within Psyr_4828 at 5731.163 kb on - strand, within Psyr_4828 at 5731.163 kb on - strand, within Psyr_4828 at 5731.163 kb on - strand, within Psyr_4828 at 5731.163 kb on - strand, within Psyr_4828 at 5731.163 kb on - strand, within Psyr_4828 at 5731.163 kb on - strand, within Psyr_4828 at 5731.163 kb on - strand, within Psyr_4828 at 5731.163 kb on - strand, within Psyr_4828 at 5731.163 kb on - strand, within Psyr_4828 at 5731.163 kb on - strand, within Psyr_4828 at 5731.269 kb on + strand, within Psyr_4828 at 5731.654 kb on + strand at 5731.666 kb on - strand at 5731.785 kb on + strand at 5731.785 kb on + strand at 5731.786 kb on - strand at 5731.786 kb on - strand at 5731.786 kb on - strand at 5731.809 kb on + strand at 5731.810 kb on - strand at 5731.817 kb on - strand at 5731.817 kb on - strand at 5731.836 kb on - strand at 5731.949 kb on + strand, within Psyr_4829 at 5731.950 kb on - strand, within Psyr_4829 at 5731.981 kb on + strand, within Psyr_4829 at 5731.981 kb on + strand, within Psyr_4829 at 5731.982 kb on - strand, within Psyr_4829 at 5731.982 kb on - strand, within Psyr_4829 at 5731.982 kb on - strand, within Psyr_4829 at 5731.982 kb on - strand, within Psyr_4829 at 5731.982 kb on - strand, within Psyr_4829 at 5731.982 kb on - strand, within Psyr_4829 at 5732.188 kb on + strand, within Psyr_4829 at 5732.190 kb on + strand, within Psyr_4829 at 5732.191 kb on - strand, within Psyr_4829 at 5732.191 kb on - strand, within Psyr_4829 at 5732.328 kb on + strand, within Psyr_4829 at 5732.328 kb on + strand, within Psyr_4829 at 5732.328 kb on + strand, within Psyr_4829 at 5732.329 kb on - strand, within Psyr_4829 at 5732.329 kb on - strand, within Psyr_4829 at 5732.329 kb on - strand, within Psyr_4829 at 5732.329 kb on - strand, within Psyr_4829 at 5732.329 kb on - strand, within Psyr_4829 at 5732.403 kb on + strand, within Psyr_4829 at 5732.403 kb on + strand, within Psyr_4829 at 5732.403 kb on + strand, within Psyr_4829 at 5732.404 kb on - strand, within Psyr_4829 at 5732.404 kb on - strand, within Psyr_4829 at 5732.404 kb on - strand, within Psyr_4829 at 5732.404 kb on - strand, within Psyr_4829 at 5732.404 kb on - strand, within Psyr_4829 at 5732.404 kb on - strand, within Psyr_4829 at 5732.460 kb on + strand, within Psyr_4829 at 5732.460 kb on + strand, within Psyr_4829 at 5732.460 kb on + strand, within Psyr_4829 at 5732.460 kb on + strand, within Psyr_4829 at 5732.460 kb on + strand, within Psyr_4829 at 5732.487 kb on + strand, within Psyr_4829 at 5732.487 kb on + strand, within Psyr_4829 at 5732.487 kb on + strand, within Psyr_4829 at 5732.487 kb on + strand, within Psyr_4829 at 5732.487 kb on + strand, within Psyr_4829 at 5732.488 kb on - strand, within Psyr_4829 at 5732.488 kb on - strand, within Psyr_4829 at 5732.488 kb on - strand, within Psyr_4829 at 5732.488 kb on - strand, within Psyr_4829 at 5732.488 kb on - strand, within Psyr_4829 at 5732.489 kb on - strand, within Psyr_4829 at 5732.490 kb on + strand, within Psyr_4829 at 5732.490 kb on + strand, within Psyr_4829 at 5732.490 kb on + strand, within Psyr_4829 at 5732.491 kb on - strand, within Psyr_4829 at 5732.491 kb on - strand, within Psyr_4829 at 5732.491 kb on - strand, within Psyr_4829 at 5732.491 kb on - strand, within Psyr_4829 at 5732.491 kb on - strand, within Psyr_4829 at 5732.796 kb on + strand at 5732.871 kb on + strand at 5732.871 kb on + strand at 5732.871 kb on + strand at 5732.871 kb on + strand at 5732.871 kb on + strand at 5732.872 kb on - strand at 5732.872 kb on - strand at 5732.945 kb on - strand at 5732.982 kb on - strand, within Psyr_4830 at 5733.296 kb on - strand, within Psyr_4830 at 5733.296 kb on - strand, within Psyr_4830 at 5733.361 kb on + strand, within Psyr_4830 at 5733.361 kb on + strand, within Psyr_4830
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mexicanolide 10 mM remove 5,730,862 + Psyr_4828 0.50 +0.9 5,731,020 + Psyr_4828 0.59 -0.4 5,731,020 + Psyr_4828 0.59 +0.2 5,731,021 - Psyr_4828 0.59 -0.2 5,731,021 - Psyr_4828 0.59 -0.1 5,731,087 + Psyr_4828 0.63 +0.3 5,731,087 + Psyr_4828 0.63 -0.4 5,731,087 + Psyr_4828 0.63 -1.6 5,731,087 + Psyr_4828 0.63 -0.3 5,731,087 + Psyr_4828 0.63 +0.4 5,731,087 + Psyr_4828 0.63 -0.2 5,731,087 + Psyr_4828 0.63 -0.3 5,731,087 + Psyr_4828 0.63 -1.2 5,731,087 + Psyr_4828 0.63 -0.1 5,731,088 - Psyr_4828 0.63 +1.2 5,731,088 - Psyr_4828 0.63 +0.1 5,731,088 - Psyr_4828 0.63 -1.9 5,731,088 - Psyr_4828 0.63 -1.0 5,731,088 - Psyr_4828 0.63 +0.6 5,731,088 - Psyr_4828 0.63 +0.2 5,731,162 + Psyr_4828 0.67 +1.3 5,731,162 + Psyr_4828 0.67 +1.4 5,731,162 + Psyr_4828 0.67 -0.5 5,731,162 + Psyr_4828 0.67 +0.6 5,731,162 + Psyr_4828 0.67 -0.9 5,731,162 + Psyr_4828 0.67 +0.3 5,731,163 - Psyr_4828 0.67 -0.2 5,731,163 - Psyr_4828 0.67 +0.1 5,731,163 - Psyr_4828 0.67 -0.0 5,731,163 - Psyr_4828 0.67 -0.1 5,731,163 - Psyr_4828 0.67 -0.3 5,731,163 - Psyr_4828 0.67 +0.3 5,731,163 - Psyr_4828 0.67 +0.5 5,731,163 - Psyr_4828 0.67 -0.0 5,731,163 - Psyr_4828 0.67 -0.7 5,731,163 - Psyr_4828 0.67 +0.2 5,731,163 - Psyr_4828 0.67 -0.7 5,731,269 + Psyr_4828 0.74 -0.8 5,731,654 + +0.6 5,731,666 - +0.9 5,731,785 + +1.4 5,731,785 + -0.4 5,731,786 - -2.2 5,731,786 - +0.1 5,731,786 - +1.1 5,731,809 + -1.9 5,731,810 - +1.1 5,731,817 - +0.5 5,731,817 - -0.0 5,731,836 - -0.7 5,731,949 + Psyr_4829 0.12 +2.1 5,731,950 - Psyr_4829 0.12 -0.2 5,731,981 + Psyr_4829 0.16 +0.1 5,731,981 + Psyr_4829 0.16 +0.1 5,731,982 - Psyr_4829 0.16 -0.0 5,731,982 - Psyr_4829 0.16 +0.0 5,731,982 - Psyr_4829 0.16 +0.2 5,731,982 - Psyr_4829 0.16 +0.6 5,731,982 - Psyr_4829 0.16 +1.0 5,731,982 - Psyr_4829 0.16 -0.6 5,732,188 + Psyr_4829 0.37 +0.6 5,732,190 + Psyr_4829 0.37 +0.9 5,732,191 - Psyr_4829 0.37 +0.5 5,732,191 - Psyr_4829 0.37 +0.1 5,732,328 + Psyr_4829 0.51 +0.4 5,732,328 + Psyr_4829 0.51 +0.2 5,732,328 + Psyr_4829 0.51 +0.0 5,732,329 - Psyr_4829 0.51 +0.5 5,732,329 - Psyr_4829 0.51 +0.3 5,732,329 - Psyr_4829 0.51 -0.2 5,732,329 - Psyr_4829 0.51 -0.7 5,732,329 - Psyr_4829 0.51 +0.3 5,732,403 + Psyr_4829 0.59 +1.7 5,732,403 + Psyr_4829 0.59 +0.8 5,732,403 + Psyr_4829 0.59 +0.0 5,732,404 - Psyr_4829 0.59 +1.0 5,732,404 - Psyr_4829 0.59 +0.0 5,732,404 - Psyr_4829 0.59 +1.5 5,732,404 - Psyr_4829 0.59 -0.2 5,732,404 - Psyr_4829 0.59 +1.3 5,732,404 - Psyr_4829 0.59 +0.0 5,732,460 + Psyr_4829 0.65 -0.3 5,732,460 + Psyr_4829 0.65 -1.2 5,732,460 + Psyr_4829 0.65 -0.4 5,732,460 + Psyr_4829 0.65 +0.1 5,732,460 + Psyr_4829 0.65 -0.8 5,732,487 + Psyr_4829 0.68 -0.5 5,732,487 + Psyr_4829 0.68 +0.5 5,732,487 + Psyr_4829 0.68 +0.2 5,732,487 + Psyr_4829 0.68 -0.4 5,732,487 + Psyr_4829 0.68 +1.1 5,732,488 - Psyr_4829 0.68 +0.8 5,732,488 - Psyr_4829 0.68 -1.0 5,732,488 - Psyr_4829 0.68 +1.0 5,732,488 - Psyr_4829 0.68 -0.5 5,732,488 - Psyr_4829 0.68 -0.3 5,732,489 - Psyr_4829 0.68 -0.1 5,732,490 + Psyr_4829 0.68 +0.3 5,732,490 + Psyr_4829 0.68 -0.3 5,732,490 + Psyr_4829 0.68 -1.1 5,732,491 - Psyr_4829 0.68 +0.3 5,732,491 - Psyr_4829 0.68 +1.9 5,732,491 - Psyr_4829 0.68 +0.3 5,732,491 - Psyr_4829 0.68 +0.4 5,732,491 - Psyr_4829 0.68 +0.7 5,732,796 + +1.4 5,732,871 + +0.2 5,732,871 + +0.1 5,732,871 + -0.8 5,732,871 + -1.4 5,732,871 + +1.2 5,732,872 - -0.8 5,732,872 - +1.5 5,732,945 - +1.1 5,732,982 - Psyr_4830 0.13 -0.3 5,733,296 - Psyr_4830 0.50 -0.4 5,733,296 - Psyr_4830 0.50 -0.5 5,733,361 + Psyr_4830 0.57 +0.9 5,733,361 + Psyr_4830 0.57 -0.3
Or see this region's nucleotide sequence