Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4278

Experiment: KB with Mexicanolide 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4277 and Psyr_4278 are separated by 336 nucleotidesPsyr_4278 and Psyr_4279 are separated by 129 nucleotides Psyr_4277: Psyr_4277 - Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region, at 5,101,714 to 5,102,490 _4277 Psyr_4278: Psyr_4278 - regulatory protein, LuxR, at 5,102,827 to 5,103,060 _4278 Psyr_4279: Psyr_4279 - 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase, at 5,103,190 to 5,104,314 _4279 Position (kb) 5102 5103 5104Strain fitness (log2 ratio) -2 -1 0 1 2at 5101.905 kb on + strand, within Psyr_4277at 5101.905 kb on + strand, within Psyr_4277at 5101.906 kb on - strand, within Psyr_4277at 5101.906 kb on - strand, within Psyr_4277at 5101.973 kb on + strand, within Psyr_4277at 5101.986 kb on - strand, within Psyr_4277at 5102.022 kb on - strand, within Psyr_4277at 5102.051 kb on + strand, within Psyr_4277at 5102.052 kb on - strand, within Psyr_4277at 5102.052 kb on - strand, within Psyr_4277at 5102.052 kb on - strand, within Psyr_4277at 5102.052 kb on - strand, within Psyr_4277at 5102.052 kb on - strand, within Psyr_4277at 5102.052 kb on - strand, within Psyr_4277at 5102.052 kb on - strand, within Psyr_4277at 5102.318 kb on + strand, within Psyr_4277at 5102.319 kb on - strand, within Psyr_4277at 5102.319 kb on - strand, within Psyr_4277at 5102.329 kb on + strand, within Psyr_4277at 5102.330 kb on - strand, within Psyr_4277at 5102.330 kb on - strand, within Psyr_4277at 5102.330 kb on - strand, within Psyr_4277at 5102.512 kb on + strandat 5102.601 kb on + strandat 5102.601 kb on + strandat 5102.606 kb on + strandat 5102.606 kb on + strandat 5102.606 kb on + strandat 5102.606 kb on + strandat 5102.607 kb on - strandat 5102.607 kb on - strandat 5102.607 kb on - strandat 5102.607 kb on - strandat 5102.607 kb on - strandat 5102.607 kb on - strandat 5102.607 kb on - strandat 5102.765 kb on + strandat 5102.765 kb on + strandat 5102.766 kb on - strandat 5102.766 kb on - strandat 5102.766 kb on - strandat 5102.775 kb on + strandat 5102.775 kb on + strandat 5102.776 kb on - strandat 5102.776 kb on - strandat 5102.785 kb on - strandat 5102.804 kb on + strandat 5102.804 kb on + strandat 5102.804 kb on + strandat 5102.804 kb on + strandat 5102.805 kb on - strandat 5102.805 kb on - strandat 5102.805 kb on - strandat 5102.805 kb on - strandat 5102.805 kb on - strandat 5102.805 kb on - strandat 5102.810 kb on + strandat 5102.810 kb on + strandat 5102.811 kb on - strandat 5102.811 kb on - strandat 5102.811 kb on - strandat 5102.824 kb on + strandat 5102.825 kb on - strandat 5102.825 kb on - strandat 5102.825 kb on - strandat 5102.825 kb on - strandat 5102.843 kb on + strandat 5103.032 kb on + strand, within Psyr_4278at 5103.032 kb on + strand, within Psyr_4278at 5103.032 kb on + strand, within Psyr_4278at 5103.033 kb on - strand, within Psyr_4278at 5103.108 kb on + strandat 5103.113 kb on - strandat 5103.160 kb on + strandat 5103.160 kb on + strandat 5103.160 kb on + strandat 5103.160 kb on + strandat 5103.160 kb on + strandat 5103.160 kb on + strandat 5103.161 kb on - strandat 5103.161 kb on - strandat 5103.161 kb on - strandat 5103.161 kb on - strandat 5103.161 kb on - strandat 5103.286 kb on + strandat 5103.573 kb on - strand, within Psyr_4279at 5103.573 kb on - strand, within Psyr_4279at 5103.667 kb on + strand, within Psyr_4279at 5103.667 kb on + strand, within Psyr_4279at 5103.667 kb on + strand, within Psyr_4279at 5103.667 kb on + strand, within Psyr_4279at 5103.667 kb on + strand, within Psyr_4279at 5103.667 kb on + strand, within Psyr_4279at 5103.667 kb on + strand, within Psyr_4279at 5103.668 kb on - strand, within Psyr_4279at 5103.668 kb on - strand, within Psyr_4279at 5103.668 kb on - strand, within Psyr_4279at 5103.668 kb on - strand, within Psyr_4279at 5103.668 kb on - strand, within Psyr_4279at 5103.668 kb on - strand, within Psyr_4279at 5103.668 kb on - strand, within Psyr_4279at 5103.668 kb on - strand, within Psyr_4279at 5103.668 kb on - strand, within Psyr_4279at 5103.668 kb on - strand, within Psyr_4279at 5103.671 kb on + strand, within Psyr_4279at 5103.671 kb on + strand, within Psyr_4279at 5103.671 kb on + strand, within Psyr_4279at 5103.671 kb on + strand, within Psyr_4279at 5103.672 kb on - strand, within Psyr_4279at 5103.672 kb on - strand, within Psyr_4279at 5103.672 kb on - strand, within Psyr_4279at 5103.672 kb on - strand, within Psyr_4279at 5103.920 kb on + strand, within Psyr_4279at 5103.961 kb on + strand, within Psyr_4279at 5103.962 kb on - strand, within Psyr_4279at 5103.962 kb on - strand, within Psyr_4279at 5103.962 kb on - strand, within Psyr_4279at 5103.962 kb on - strand, within Psyr_4279

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mexicanolide 10 mM
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5,101,905 + Psyr_4277 0.25 -0.9
5,101,905 + Psyr_4277 0.25 -1.8
5,101,906 - Psyr_4277 0.25 -0.3
5,101,906 - Psyr_4277 0.25 -0.6
5,101,973 + Psyr_4277 0.33 -1.1
5,101,986 - Psyr_4277 0.35 +0.2
5,102,022 - Psyr_4277 0.40 -0.2
5,102,051 + Psyr_4277 0.43 +0.5
5,102,052 - Psyr_4277 0.44 -0.5
5,102,052 - Psyr_4277 0.44 -0.5
5,102,052 - Psyr_4277 0.44 +1.4
5,102,052 - Psyr_4277 0.44 +0.8
5,102,052 - Psyr_4277 0.44 -0.3
5,102,052 - Psyr_4277 0.44 -2.0
5,102,052 - Psyr_4277 0.44 -0.4
5,102,318 + Psyr_4277 0.78 +0.0
5,102,319 - Psyr_4277 0.78 -0.6
5,102,319 - Psyr_4277 0.78 +0.1
5,102,329 + Psyr_4277 0.79 -0.3
5,102,330 - Psyr_4277 0.79 +0.0
5,102,330 - Psyr_4277 0.79 +1.5
5,102,330 - Psyr_4277 0.79 -0.3
5,102,512 + -0.6
5,102,601 + +0.4
5,102,601 + -0.1
5,102,606 + +0.7
5,102,606 + -0.4
5,102,606 + +0.2
5,102,606 + -1.5
5,102,607 - -0.1
5,102,607 - -0.7
5,102,607 - -0.0
5,102,607 - +2.2
5,102,607 - -0.4
5,102,607 - -0.4
5,102,607 - -0.3
5,102,765 + -0.1
5,102,765 + +1.4
5,102,766 - -0.2
5,102,766 - +0.1
5,102,766 - -0.1
5,102,775 + +0.8
5,102,775 + +0.5
5,102,776 - +0.1
5,102,776 - -0.8
5,102,785 - -0.2
5,102,804 + -0.3
5,102,804 + +0.3
5,102,804 + -0.1
5,102,804 + -0.6
5,102,805 - +0.0
5,102,805 - +0.3
5,102,805 - -0.0
5,102,805 - -0.5
5,102,805 - +0.5
5,102,805 - -0.6
5,102,810 + -0.4
5,102,810 + +1.9
5,102,811 - -1.6
5,102,811 - +1.0
5,102,811 - -1.5
5,102,824 + -0.0
5,102,825 - +0.4
5,102,825 - +0.8
5,102,825 - -0.3
5,102,825 - -1.1
5,102,843 + -0.3
5,103,032 + Psyr_4278 0.88 -1.2
5,103,032 + Psyr_4278 0.88 -0.3
5,103,032 + Psyr_4278 0.88 +0.5
5,103,033 - Psyr_4278 0.88 -2.3
5,103,108 + +0.5
5,103,113 - -0.4
5,103,160 + -0.5
5,103,160 + -1.3
5,103,160 + +0.3
5,103,160 + -0.1
5,103,160 + +0.6
5,103,160 + -0.8
5,103,161 - -0.6
5,103,161 - -0.0
5,103,161 - +0.6
5,103,161 - +0.5
5,103,161 - -0.1
5,103,286 + +0.1
5,103,573 - Psyr_4279 0.34 +0.5
5,103,573 - Psyr_4279 0.34 +0.2
5,103,667 + Psyr_4279 0.42 -0.7
5,103,667 + Psyr_4279 0.42 +0.3
5,103,667 + Psyr_4279 0.42 +1.5
5,103,667 + Psyr_4279 0.42 +0.8
5,103,667 + Psyr_4279 0.42 -0.6
5,103,667 + Psyr_4279 0.42 -0.1
5,103,667 + Psyr_4279 0.42 +0.2
5,103,668 - Psyr_4279 0.42 -1.2
5,103,668 - Psyr_4279 0.42 -0.4
5,103,668 - Psyr_4279 0.42 +1.3
5,103,668 - Psyr_4279 0.42 -1.0
5,103,668 - Psyr_4279 0.42 -0.7
5,103,668 - Psyr_4279 0.42 -0.4
5,103,668 - Psyr_4279 0.42 +0.8
5,103,668 - Psyr_4279 0.42 +0.5
5,103,668 - Psyr_4279 0.42 +0.1
5,103,668 - Psyr_4279 0.42 -0.4
5,103,671 + Psyr_4279 0.43 -1.0
5,103,671 + Psyr_4279 0.43 -2.1
5,103,671 + Psyr_4279 0.43 +0.6
5,103,671 + Psyr_4279 0.43 -0.6
5,103,672 - Psyr_4279 0.43 -0.8
5,103,672 - Psyr_4279 0.43 +0.5
5,103,672 - Psyr_4279 0.43 +0.0
5,103,672 - Psyr_4279 0.43 -0.8
5,103,920 + Psyr_4279 0.65 -0.1
5,103,961 + Psyr_4279 0.69 -0.4
5,103,962 - Psyr_4279 0.69 +0.7
5,103,962 - Psyr_4279 0.69 +1.2
5,103,962 - Psyr_4279 0.69 -0.5
5,103,962 - Psyr_4279 0.69 -0.6

Or see this region's nucleotide sequence