Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4118

Experiment: KB with Mexicanolide 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4116 and Psyr_4117 are separated by 60 nucleotidesPsyr_4117 and Psyr_4118 are separated by 17 nucleotidesPsyr_4118 and Psyr_4119 are separated by 281 nucleotidesPsyr_4119 and Psyr_4120 are separated by 14 nucleotides Psyr_4116: Psyr_4116 - Transport-associated protein, at 4,906,715 to 4,907,293 _4116 Psyr_4117: Psyr_4117 - Stringent starvation protein B, at 4,907,354 to 4,907,773 _4117 Psyr_4118: Psyr_4118 - Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal, at 4,907,791 to 4,908,408 _4118 Psyr_4119: Psyr_4119 - SSU ribosomal protein S9P, at 4,908,690 to 4,909,082 _4119 Psyr_4120: Psyr_4120 - LSU ribosomal protein L13P, at 4,909,097 to 4,909,525 _4120 Position (kb) 4907 4908 4909Strain fitness (log2 ratio) -2 -1 0 1 2at 4907.163 kb on + strand, within Psyr_4116at 4907.164 kb on - strand, within Psyr_4116at 4907.282 kb on + strandat 4907.282 kb on + strandat 4907.282 kb on + strandat 4907.282 kb on + strandat 4907.282 kb on + strandat 4907.282 kb on + strandat 4907.282 kb on + strandat 4907.282 kb on + strandat 4907.283 kb on - strandat 4907.283 kb on - strandat 4907.283 kb on - strandat 4907.341 kb on + strandat 4907.508 kb on + strand, within Psyr_4117at 4907.508 kb on + strand, within Psyr_4117at 4907.508 kb on + strand, within Psyr_4117at 4907.509 kb on - strand, within Psyr_4117at 4907.509 kb on - strand, within Psyr_4117at 4907.509 kb on - strand, within Psyr_4117at 4907.512 kb on + strand, within Psyr_4117at 4907.534 kb on + strand, within Psyr_4117at 4907.534 kb on + strand, within Psyr_4117at 4907.534 kb on + strand, within Psyr_4117at 4907.535 kb on - strand, within Psyr_4117at 4907.535 kb on - strand, within Psyr_4117at 4907.538 kb on + strand, within Psyr_4117at 4907.539 kb on - strand, within Psyr_4117at 4907.539 kb on - strand, within Psyr_4117at 4907.539 kb on - strand, within Psyr_4117at 4907.539 kb on - strand, within Psyr_4117at 4907.539 kb on - strand, within Psyr_4117at 4907.596 kb on + strand, within Psyr_4117at 4907.596 kb on + strand, within Psyr_4117at 4907.597 kb on - strand, within Psyr_4117at 4907.736 kb on + strandat 4907.736 kb on + strandat 4907.736 kb on + strandat 4907.736 kb on + strandat 4907.737 kb on - strandat 4907.737 kb on - strandat 4907.754 kb on + strandat 4907.861 kb on + strand, within Psyr_4118at 4907.861 kb on + strand, within Psyr_4118at 4907.861 kb on + strand, within Psyr_4118at 4907.861 kb on + strand, within Psyr_4118at 4907.861 kb on + strand, within Psyr_4118at 4907.862 kb on - strand, within Psyr_4118at 4907.862 kb on - strand, within Psyr_4118at 4907.862 kb on - strand, within Psyr_4118at 4907.862 kb on - strand, within Psyr_4118at 4907.862 kb on - strand, within Psyr_4118at 4907.862 kb on - strand, within Psyr_4118at 4907.862 kb on - strand, within Psyr_4118at 4907.932 kb on + strand, within Psyr_4118at 4907.953 kb on + strand, within Psyr_4118at 4907.953 kb on + strand, within Psyr_4118at 4907.954 kb on - strand, within Psyr_4118at 4907.954 kb on - strand, within Psyr_4118at 4907.954 kb on - strand, within Psyr_4118at 4907.954 kb on - strand, within Psyr_4118at 4907.954 kb on - strand, within Psyr_4118at 4907.954 kb on - strand, within Psyr_4118at 4907.954 kb on - strand, within Psyr_4118at 4908.126 kb on + strand, within Psyr_4118at 4908.188 kb on + strand, within Psyr_4118at 4908.212 kb on + strand, within Psyr_4118at 4908.212 kb on + strand, within Psyr_4118at 4908.212 kb on + strand, within Psyr_4118at 4908.213 kb on - strand, within Psyr_4118at 4908.213 kb on - strand, within Psyr_4118at 4908.262 kb on + strand, within Psyr_4118at 4908.263 kb on - strand, within Psyr_4118at 4908.518 kb on + strandat 4908.519 kb on - strandat 4908.527 kb on + strandat 4908.528 kb on - strandat 4908.536 kb on + strandat 4908.578 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mexicanolide 10 mM
remove
4,907,163 + Psyr_4116 0.77 +0.1
4,907,164 - Psyr_4116 0.78 -0.3
4,907,282 + +0.1
4,907,282 + +0.4
4,907,282 + -0.7
4,907,282 + -1.3
4,907,282 + +0.6
4,907,282 + +0.6
4,907,282 + -0.7
4,907,282 + -0.3
4,907,283 - -1.3
4,907,283 - -1.1
4,907,283 - +0.2
4,907,341 + +0.5
4,907,508 + Psyr_4117 0.37 +0.1
4,907,508 + Psyr_4117 0.37 +0.6
4,907,508 + Psyr_4117 0.37 -0.4
4,907,509 - Psyr_4117 0.37 +0.2
4,907,509 - Psyr_4117 0.37 +0.7
4,907,509 - Psyr_4117 0.37 -1.1
4,907,512 + Psyr_4117 0.38 -0.4
4,907,534 + Psyr_4117 0.43 -0.2
4,907,534 + Psyr_4117 0.43 +1.1
4,907,534 + Psyr_4117 0.43 -2.4
4,907,535 - Psyr_4117 0.43 -0.1
4,907,535 - Psyr_4117 0.43 -1.3
4,907,538 + Psyr_4117 0.44 -1.1
4,907,539 - Psyr_4117 0.44 -0.1
4,907,539 - Psyr_4117 0.44 -0.4
4,907,539 - Psyr_4117 0.44 -1.9
4,907,539 - Psyr_4117 0.44 -0.3
4,907,539 - Psyr_4117 0.44 +0.2
4,907,596 + Psyr_4117 0.58 -0.6
4,907,596 + Psyr_4117 0.58 -1.7
4,907,597 - Psyr_4117 0.58 +0.6
4,907,736 + +0.4
4,907,736 + -0.7
4,907,736 + +0.9
4,907,736 + -0.9
4,907,737 - -2.0
4,907,737 - +0.7
4,907,754 + -2.2
4,907,861 + Psyr_4118 0.11 -1.7
4,907,861 + Psyr_4118 0.11 -0.2
4,907,861 + Psyr_4118 0.11 -0.1
4,907,861 + Psyr_4118 0.11 -1.1
4,907,861 + Psyr_4118 0.11 -0.6
4,907,862 - Psyr_4118 0.11 -1.2
4,907,862 - Psyr_4118 0.11 -0.1
4,907,862 - Psyr_4118 0.11 +0.5
4,907,862 - Psyr_4118 0.11 -1.2
4,907,862 - Psyr_4118 0.11 +2.1
4,907,862 - Psyr_4118 0.11 -1.4
4,907,862 - Psyr_4118 0.11 -0.6
4,907,932 + Psyr_4118 0.23 -0.1
4,907,953 + Psyr_4118 0.26 -0.7
4,907,953 + Psyr_4118 0.26 +0.4
4,907,954 - Psyr_4118 0.26 -0.4
4,907,954 - Psyr_4118 0.26 -0.7
4,907,954 - Psyr_4118 0.26 -1.2
4,907,954 - Psyr_4118 0.26 +0.8
4,907,954 - Psyr_4118 0.26 -1.3
4,907,954 - Psyr_4118 0.26 -1.2
4,907,954 - Psyr_4118 0.26 -0.9
4,908,126 + Psyr_4118 0.54 -0.2
4,908,188 + Psyr_4118 0.64 -1.3
4,908,212 + Psyr_4118 0.68 -1.6
4,908,212 + Psyr_4118 0.68 -0.9
4,908,212 + Psyr_4118 0.68 -1.2
4,908,213 - Psyr_4118 0.68 -1.9
4,908,213 - Psyr_4118 0.68 -0.2
4,908,262 + Psyr_4118 0.76 -0.6
4,908,263 - Psyr_4118 0.76 -0.2
4,908,518 + -0.7
4,908,519 - -0.5
4,908,527 + -0.2
4,908,528 - -0.3
4,908,536 + -1.9
4,908,578 + -1.2

Or see this region's nucleotide sequence