Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4112

Experiment: KB with Mexicanolide 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4111 and Psyr_4112 are separated by 750 nucleotidesPsyr_4112 and Psyr_4113 are separated by 235 nucleotides Psyr_4111: Psyr_4111 - Protein of unknown function UPF0040, at 4,901,422 to 4,901,877 _4111 Psyr_4112: Psyr_4112 - Protein of unknown function UPF0011, at 4,902,628 to 4,903,542 _4112 Psyr_4113: Psyr_4113 - LppC putative lipoprotein, at 4,903,778 to 4,905,592 _4113 Position (kb) 4902 4903 4904Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4901.641 kb on - strand, within Psyr_4111at 4901.895 kb on - strandat 4901.956 kb on - strandat 4901.956 kb on - strandat 4902.586 kb on - strandat 4902.586 kb on - strandat 4902.588 kb on + strandat 4902.588 kb on + strandat 4902.588 kb on + strandat 4902.589 kb on - strandat 4902.589 kb on - strandat 4902.589 kb on - strandat 4902.589 kb on - strandat 4902.589 kb on - strandat 4902.629 kb on + strandat 4902.629 kb on + strandat 4902.629 kb on + strandat 4902.630 kb on - strandat 4902.660 kb on - strandat 4902.685 kb on + strandat 4902.686 kb on - strandat 4902.834 kb on + strand, within Psyr_4112at 4902.834 kb on + strand, within Psyr_4112at 4902.835 kb on - strand, within Psyr_4112at 4902.835 kb on - strand, within Psyr_4112at 4902.868 kb on + strand, within Psyr_4112at 4902.868 kb on + strand, within Psyr_4112at 4902.869 kb on - strand, within Psyr_4112at 4902.869 kb on - strand, within Psyr_4112at 4902.869 kb on - strand, within Psyr_4112at 4902.869 kb on - strand, within Psyr_4112at 4902.905 kb on - strand, within Psyr_4112at 4902.992 kb on + strand, within Psyr_4112at 4902.992 kb on + strand, within Psyr_4112at 4902.992 kb on + strand, within Psyr_4112at 4902.993 kb on - strand, within Psyr_4112at 4902.993 kb on - strand, within Psyr_4112at 4902.993 kb on - strand, within Psyr_4112at 4902.993 kb on - strand, within Psyr_4112at 4902.993 kb on - strand, within Psyr_4112at 4902.993 kb on - strand, within Psyr_4112at 4902.993 kb on - strand, within Psyr_4112at 4902.995 kb on + strand, within Psyr_4112at 4902.995 kb on + strand, within Psyr_4112at 4902.995 kb on + strand, within Psyr_4112at 4902.995 kb on + strand, within Psyr_4112at 4902.995 kb on + strand, within Psyr_4112at 4902.995 kb on + strand, within Psyr_4112at 4902.995 kb on + strand, within Psyr_4112at 4902.995 kb on + strand, within Psyr_4112at 4902.995 kb on + strand, within Psyr_4112at 4902.995 kb on + strand, within Psyr_4112at 4902.996 kb on - strand, within Psyr_4112at 4902.996 kb on - strand, within Psyr_4112at 4902.996 kb on - strand, within Psyr_4112at 4902.996 kb on - strand, within Psyr_4112at 4902.996 kb on - strand, within Psyr_4112at 4902.996 kb on - strand, within Psyr_4112at 4902.996 kb on - strand, within Psyr_4112at 4902.996 kb on - strand, within Psyr_4112at 4902.996 kb on - strand, within Psyr_4112at 4902.996 kb on - strand, within Psyr_4112at 4902.996 kb on - strand, within Psyr_4112at 4902.996 kb on - strand, within Psyr_4112at 4902.996 kb on - strand, within Psyr_4112at 4903.293 kb on + strand, within Psyr_4112at 4903.293 kb on + strand, within Psyr_4112at 4903.293 kb on + strand, within Psyr_4112at 4903.293 kb on + strand, within Psyr_4112at 4903.294 kb on - strand, within Psyr_4112at 4903.294 kb on - strand, within Psyr_4112at 4903.294 kb on - strand, within Psyr_4112at 4903.294 kb on - strand, within Psyr_4112at 4903.294 kb on - strand, within Psyr_4112at 4903.320 kb on + strand, within Psyr_4112at 4903.320 kb on + strand, within Psyr_4112at 4903.321 kb on - strand, within Psyr_4112at 4903.321 kb on - strand, within Psyr_4112at 4903.321 kb on - strand, within Psyr_4112at 4903.437 kb on + strand, within Psyr_4112at 4903.450 kb on + strand, within Psyr_4112at 4903.450 kb on + strand, within Psyr_4112at 4903.450 kb on + strand, within Psyr_4112at 4903.451 kb on - strandat 4903.454 kb on + strandat 4903.454 kb on + strandat 4903.454 kb on + strandat 4903.455 kb on - strandat 4903.455 kb on - strandat 4903.455 kb on - strandat 4903.455 kb on - strandat 4903.455 kb on - strandat 4903.516 kb on + strandat 4903.517 kb on - strandat 4903.545 kb on + strandat 4903.545 kb on + strandat 4903.545 kb on + strandat 4903.545 kb on + strandat 4903.545 kb on + strandat 4903.545 kb on + strandat 4903.546 kb on - strandat 4903.546 kb on - strandat 4903.676 kb on - strandat 4903.698 kb on + strandat 4903.699 kb on - strandat 4903.699 kb on - strandat 4903.702 kb on + strandat 4903.702 kb on + strandat 4903.703 kb on - strandat 4903.703 kb on - strandat 4903.736 kb on + strandat 4903.737 kb on - strandat 4903.773 kb on + strandat 4903.773 kb on + strandat 4903.773 kb on + strandat 4903.773 kb on + strandat 4903.773 kb on + strandat 4903.773 kb on + strandat 4903.773 kb on + strandat 4903.773 kb on + strandat 4903.774 kb on - strandat 4903.774 kb on - strandat 4903.774 kb on - strandat 4904.359 kb on + strand, within Psyr_4113

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mexicanolide 10 mM
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4,901,641 - Psyr_4111 0.48 -0.2
4,901,895 - -1.9
4,901,956 - +0.6
4,901,956 - -2.9
4,902,586 - +0.2
4,902,586 - -0.3
4,902,588 + -0.3
4,902,588 + -2.7
4,902,588 + -2.2
4,902,589 - -0.1
4,902,589 - +0.6
4,902,589 - -0.4
4,902,589 - +0.3
4,902,589 - -0.8
4,902,629 + -1.2
4,902,629 + -1.3
4,902,629 + -0.9
4,902,630 - -0.5
4,902,660 - -2.8
4,902,685 + -1.6
4,902,686 - -0.3
4,902,834 + Psyr_4112 0.23 -0.3
4,902,834 + Psyr_4112 0.23 -1.0
4,902,835 - Psyr_4112 0.23 -0.4
4,902,835 - Psyr_4112 0.23 -1.4
4,902,868 + Psyr_4112 0.26 -0.9
4,902,868 + Psyr_4112 0.26 -2.8
4,902,869 - Psyr_4112 0.26 +0.1
4,902,869 - Psyr_4112 0.26 -0.6
4,902,869 - Psyr_4112 0.26 -1.3
4,902,869 - Psyr_4112 0.26 +1.1
4,902,905 - Psyr_4112 0.30 +0.7
4,902,992 + Psyr_4112 0.40 -1.8
4,902,992 + Psyr_4112 0.40 -1.3
4,902,992 + Psyr_4112 0.40 -0.4
4,902,993 - Psyr_4112 0.40 -0.4
4,902,993 - Psyr_4112 0.40 -0.5
4,902,993 - Psyr_4112 0.40 -1.2
4,902,993 - Psyr_4112 0.40 +0.1
4,902,993 - Psyr_4112 0.40 -0.6
4,902,993 - Psyr_4112 0.40 -1.1
4,902,993 - Psyr_4112 0.40 -0.3
4,902,995 + Psyr_4112 0.40 -0.6
4,902,995 + Psyr_4112 0.40 -1.9
4,902,995 + Psyr_4112 0.40 -1.2
4,902,995 + Psyr_4112 0.40 +0.7
4,902,995 + Psyr_4112 0.40 -1.5
4,902,995 + Psyr_4112 0.40 -1.6
4,902,995 + Psyr_4112 0.40 +0.3
4,902,995 + Psyr_4112 0.40 -0.5
4,902,995 + Psyr_4112 0.40 -1.1
4,902,995 + Psyr_4112 0.40 -1.1
4,902,996 - Psyr_4112 0.40 -0.3
4,902,996 - Psyr_4112 0.40 -1.3
4,902,996 - Psyr_4112 0.40 +0.4
4,902,996 - Psyr_4112 0.40 -1.8
4,902,996 - Psyr_4112 0.40 -1.2
4,902,996 - Psyr_4112 0.40 +0.4
4,902,996 - Psyr_4112 0.40 +1.8
4,902,996 - Psyr_4112 0.40 -0.7
4,902,996 - Psyr_4112 0.40 -0.5
4,902,996 - Psyr_4112 0.40 -0.5
4,902,996 - Psyr_4112 0.40 -0.1
4,902,996 - Psyr_4112 0.40 -1.5
4,902,996 - Psyr_4112 0.40 -1.5
4,903,293 + Psyr_4112 0.73 -1.7
4,903,293 + Psyr_4112 0.73 -2.0
4,903,293 + Psyr_4112 0.73 -0.9
4,903,293 + Psyr_4112 0.73 -2.0
4,903,294 - Psyr_4112 0.73 -1.4
4,903,294 - Psyr_4112 0.73 -0.2
4,903,294 - Psyr_4112 0.73 -0.5
4,903,294 - Psyr_4112 0.73 +0.6
4,903,294 - Psyr_4112 0.73 +1.3
4,903,320 + Psyr_4112 0.76 -3.9
4,903,320 + Psyr_4112 0.76 -1.3
4,903,321 - Psyr_4112 0.76 -0.5
4,903,321 - Psyr_4112 0.76 +0.6
4,903,321 - Psyr_4112 0.76 -1.7
4,903,437 + Psyr_4112 0.88 -2.2
4,903,450 + Psyr_4112 0.90 -1.4
4,903,450 + Psyr_4112 0.90 -0.8
4,903,450 + Psyr_4112 0.90 -0.2
4,903,451 - +0.5
4,903,454 + -1.5
4,903,454 + -1.2
4,903,454 + -0.2
4,903,455 - -1.2
4,903,455 - -0.5
4,903,455 - -1.7
4,903,455 - +0.3
4,903,455 - -1.3
4,903,516 + +1.1
4,903,517 - +0.9
4,903,545 + -3.3
4,903,545 + -0.6
4,903,545 + -1.3
4,903,545 + +0.7
4,903,545 + -3.6
4,903,545 + -1.1
4,903,546 - +0.2
4,903,546 - +0.0
4,903,676 - +1.0
4,903,698 + -0.5
4,903,699 - +0.3
4,903,699 - -1.9
4,903,702 + +1.3
4,903,702 + -0.4
4,903,703 - +0.1
4,903,703 - -1.0
4,903,736 + +0.0
4,903,737 - +0.3
4,903,773 + -0.1
4,903,773 + +0.4
4,903,773 + -1.5
4,903,773 + +0.1
4,903,773 + -1.0
4,903,773 + -2.2
4,903,773 + -0.6
4,903,773 + -2.5
4,903,774 - -0.3
4,903,774 - +1.1
4,903,774 - -0.6
4,904,359 + Psyr_4113 0.32 +0.7

Or see this region's nucleotide sequence