Experiment: KB with Mexicanolide 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3807 and Psyr_3808 overlap by 4 nucleotides Psyr_3808 and Psyr_3809 overlap by 4 nucleotides
Psyr_3807: Psyr_3807 - hypothetical protein, at 4,527,902 to 4,529,116
_3807
Psyr_3808: Psyr_3808 - hypothetical protein, at 4,529,113 to 4,529,592
_3808
Psyr_3809: Psyr_3809 - hypothetical protein, at 4,529,589 to 4,531,439
_3809
Position (kb) 4527
4528
4529
4530 Strain fitness (log2 ratio) -2
-1
0
1 at 4526.988 kb on + strand at 4527.025 kb on + strand at 4527.025 kb on + strand at 4527.025 kb on + strand at 4527.026 kb on - strand at 4527.029 kb on + strand at 4527.030 kb on - strand at 4527.030 kb on - strand at 4527.030 kb on - strand at 4527.103 kb on - strand at 4527.103 kb on - strand at 4527.134 kb on - strand at 4527.218 kb on + strand at 4527.330 kb on + strand at 4527.330 kb on + strand at 4527.330 kb on + strand at 4527.330 kb on + strand at 4527.330 kb on + strand at 4527.330 kb on + strand at 4527.331 kb on - strand at 4527.331 kb on - strand at 4527.331 kb on - strand at 4527.331 kb on - strand at 4527.331 kb on - strand at 4527.381 kb on + strand at 4527.381 kb on + strand at 4527.382 kb on - strand at 4527.447 kb on - strand at 4527.527 kb on - strand at 4527.545 kb on - strand at 4527.545 kb on - strand at 4527.545 kb on - strand at 4527.623 kb on + strand at 4527.623 kb on + strand at 4527.644 kb on + strand at 4527.644 kb on + strand at 4527.645 kb on - strand at 4527.645 kb on - strand at 4527.645 kb on - strand at 4527.648 kb on - strand at 4527.749 kb on + strand at 4527.750 kb on - strand at 4527.764 kb on - strand at 4527.764 kb on - strand at 4527.818 kb on + strand at 4527.818 kb on + strand at 4527.818 kb on + strand at 4527.829 kb on - strand at 4527.975 kb on - strand at 4527.977 kb on + strand at 4528.093 kb on + strand, within Psyr_3807 at 4528.093 kb on + strand, within Psyr_3807 at 4528.131 kb on + strand, within Psyr_3807 at 4528.132 kb on - strand, within Psyr_3807 at 4528.141 kb on - strand, within Psyr_3807 at 4528.141 kb on - strand, within Psyr_3807 at 4528.344 kb on + strand, within Psyr_3807 at 4528.348 kb on - strand, within Psyr_3807 at 4528.410 kb on + strand, within Psyr_3807 at 4528.411 kb on - strand, within Psyr_3807 at 4528.411 kb on - strand, within Psyr_3807 at 4528.411 kb on - strand, within Psyr_3807 at 4528.489 kb on + strand, within Psyr_3807 at 4528.567 kb on - strand, within Psyr_3807 at 4528.600 kb on + strand, within Psyr_3807 at 4528.600 kb on + strand, within Psyr_3807 at 4528.703 kb on + strand, within Psyr_3807 at 4528.703 kb on + strand, within Psyr_3807 at 4528.704 kb on - strand, within Psyr_3807 at 4528.704 kb on - strand, within Psyr_3807 at 4528.704 kb on - strand, within Psyr_3807 at 4528.729 kb on - strand, within Psyr_3807 at 4528.817 kb on - strand, within Psyr_3807 at 4528.993 kb on + strand, within Psyr_3807 at 4529.036 kb on - strand at 4529.081 kb on - strand at 4529.095 kb on + strand at 4529.148 kb on - strand at 4529.333 kb on + strand, within Psyr_3808 at 4529.509 kb on - strand, within Psyr_3808 at 4529.582 kb on + strand at 4529.611 kb on + strand at 4529.612 kb on - strand at 4529.645 kb on + strand at 4529.675 kb on - strand at 4529.678 kb on - strand at 4529.767 kb on + strand at 4529.809 kb on + strand, within Psyr_3809 at 4529.809 kb on + strand, within Psyr_3809 at 4529.888 kb on - strand, within Psyr_3809 at 4529.888 kb on - strand, within Psyr_3809 at 4529.934 kb on - strand, within Psyr_3809 at 4530.084 kb on + strand, within Psyr_3809
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mexicanolide 10 mM remove 4,526,988 + -0.5 4,527,025 + -0.1 4,527,025 + -0.2 4,527,025 + -0.4 4,527,026 - +0.3 4,527,029 + -0.8 4,527,030 - +0.6 4,527,030 - -1.1 4,527,030 - -2.7 4,527,103 - -1.7 4,527,103 - -1.0 4,527,134 - -0.4 4,527,218 + +1.4 4,527,330 + +0.9 4,527,330 + +1.0 4,527,330 + +0.1 4,527,330 + +0.2 4,527,330 + -0.1 4,527,330 + -0.8 4,527,331 - -0.6 4,527,331 - +0.1 4,527,331 - +0.1 4,527,331 - +0.4 4,527,331 - -1.3 4,527,381 + +0.7 4,527,381 + -2.2 4,527,382 - +0.8 4,527,447 - -2.2 4,527,527 - -1.0 4,527,545 - -2.3 4,527,545 - +0.8 4,527,545 - +0.0 4,527,623 + -1.2 4,527,623 + -0.6 4,527,644 + -0.2 4,527,644 + -1.6 4,527,645 - -2.2 4,527,645 - +1.1 4,527,645 - +0.5 4,527,648 - -1.3 4,527,749 + -1.2 4,527,750 - -0.6 4,527,764 - -1.6 4,527,764 - -0.9 4,527,818 + -0.8 4,527,818 + -0.9 4,527,818 + +0.1 4,527,829 - -0.2 4,527,975 - -0.9 4,527,977 + +0.7 4,528,093 + Psyr_3807 0.16 -1.9 4,528,093 + Psyr_3807 0.16 -0.4 4,528,131 + Psyr_3807 0.19 -2.7 4,528,132 - Psyr_3807 0.19 -1.7 4,528,141 - Psyr_3807 0.20 -0.2 4,528,141 - Psyr_3807 0.20 -1.2 4,528,344 + Psyr_3807 0.36 -0.2 4,528,348 - Psyr_3807 0.37 -0.7 4,528,410 + Psyr_3807 0.42 +0.3 4,528,411 - Psyr_3807 0.42 -0.3 4,528,411 - Psyr_3807 0.42 -0.4 4,528,411 - Psyr_3807 0.42 -0.4 4,528,489 + Psyr_3807 0.48 +0.7 4,528,567 - Psyr_3807 0.55 -1.4 4,528,600 + Psyr_3807 0.57 -0.2 4,528,600 + Psyr_3807 0.57 -0.7 4,528,703 + Psyr_3807 0.66 -1.0 4,528,703 + Psyr_3807 0.66 +0.4 4,528,704 - Psyr_3807 0.66 -0.7 4,528,704 - Psyr_3807 0.66 -1.7 4,528,704 - Psyr_3807 0.66 -2.3 4,528,729 - Psyr_3807 0.68 -0.2 4,528,817 - Psyr_3807 0.75 -0.4 4,528,993 + Psyr_3807 0.90 -0.4 4,529,036 - -0.1 4,529,081 - -0.4 4,529,095 + -0.2 4,529,148 - -0.7 4,529,333 + Psyr_3808 0.46 -0.7 4,529,509 - Psyr_3808 0.82 +0.1 4,529,582 + -0.9 4,529,611 + -0.4 4,529,612 - +0.5 4,529,645 + -0.9 4,529,675 - -1.8 4,529,678 - -1.4 4,529,767 + -0.1 4,529,809 + Psyr_3809 0.12 -0.5 4,529,809 + Psyr_3809 0.12 -0.4 4,529,888 - Psyr_3809 0.16 -2.0 4,529,888 - Psyr_3809 0.16 -1.6 4,529,934 - Psyr_3809 0.19 -2.4 4,530,084 + Psyr_3809 0.27 -0.4
Or see this region's nucleotide sequence