Experiment: KB with Mexicanolide 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3754 and Psyr_3755 are separated by 313 nucleotides Psyr_3755 and Psyr_3756 are separated by 119 nucleotides Psyr_3756 and Psyr_3757 overlap by 4 nucleotides Psyr_3757 and Psyr_3758 are separated by 234 nucleotides
Psyr_3754: Psyr_3754 - conserved hypothetical protein, at 4,471,534 to 4,471,914
_3754
Psyr_3755: Psyr_3755 - conserved hypothetical protein, at 4,472,228 to 4,472,386
_3755
Psyr_3756: Psyr_3756 - Na+/solute symporter, at 4,472,506 to 4,474,164
_3756
Psyr_3757: Psyr_3757 - Protein of unknown function DUF485, at 4,474,161 to 4,474,472
_3757
Psyr_3758: Psyr_3758 - Substrate-binding region of ABC-type glycine betaine transport system, at 4,474,707 to 4,475,561
_3758
Position (kb) 4472
4473
4474
4475 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4471.559 kb on + strand at 4471.559 kb on + strand at 4471.580 kb on + strand, within Psyr_3754 at 4471.580 kb on + strand, within Psyr_3754 at 4471.580 kb on + strand, within Psyr_3754 at 4471.580 kb on + strand, within Psyr_3754 at 4471.627 kb on + strand, within Psyr_3754 at 4471.670 kb on + strand, within Psyr_3754 at 4471.670 kb on + strand, within Psyr_3754 at 4471.695 kb on - strand, within Psyr_3754 at 4471.751 kb on + strand, within Psyr_3754 at 4471.751 kb on + strand, within Psyr_3754 at 4471.752 kb on - strand, within Psyr_3754 at 4471.828 kb on + strand, within Psyr_3754 at 4471.867 kb on + strand, within Psyr_3754 at 4471.867 kb on + strand, within Psyr_3754 at 4471.867 kb on + strand, within Psyr_3754 at 4471.868 kb on - strand, within Psyr_3754 at 4471.868 kb on - strand, within Psyr_3754 at 4472.196 kb on + strand at 4472.201 kb on - strand at 4472.201 kb on - strand at 4472.207 kb on - strand at 4472.207 kb on - strand at 4472.211 kb on + strand at 4472.212 kb on - strand at 4472.248 kb on + strand, within Psyr_3755 at 4472.272 kb on - strand, within Psyr_3755 at 4472.315 kb on + strand, within Psyr_3755 at 4472.382 kb on + strand at 4472.382 kb on + strand at 4472.382 kb on + strand at 4472.382 kb on + strand at 4472.383 kb on - strand at 4472.411 kb on + strand at 4472.412 kb on - strand at 4472.412 kb on - strand at 4472.412 kb on - strand at 4472.413 kb on + strand at 4472.413 kb on + strand at 4472.413 kb on + strand at 4472.413 kb on + strand at 4472.413 kb on + strand at 4472.413 kb on + strand at 4472.414 kb on - strand at 4472.414 kb on - strand at 4472.414 kb on - strand at 4472.421 kb on - strand at 4472.507 kb on + strand at 4472.508 kb on - strand at 4472.508 kb on - strand at 4472.565 kb on - strand at 4472.625 kb on + strand at 4472.625 kb on + strand at 4472.630 kb on - strand at 4472.630 kb on - strand at 4472.801 kb on + strand, within Psyr_3756 at 4472.801 kb on + strand, within Psyr_3756 at 4472.801 kb on + strand, within Psyr_3756 at 4472.801 kb on + strand, within Psyr_3756 at 4472.802 kb on - strand, within Psyr_3756 at 4472.996 kb on + strand, within Psyr_3756 at 4472.996 kb on + strand, within Psyr_3756 at 4472.996 kb on + strand, within Psyr_3756 at 4472.996 kb on + strand, within Psyr_3756 at 4472.996 kb on + strand, within Psyr_3756 at 4472.996 kb on + strand, within Psyr_3756 at 4472.997 kb on - strand, within Psyr_3756 at 4472.997 kb on - strand, within Psyr_3756 at 4472.997 kb on - strand, within Psyr_3756 at 4472.997 kb on - strand, within Psyr_3756 at 4472.997 kb on - strand, within Psyr_3756 at 4472.997 kb on - strand, within Psyr_3756 at 4473.233 kb on + strand, within Psyr_3756 at 4473.233 kb on + strand, within Psyr_3756 at 4473.233 kb on + strand, within Psyr_3756 at 4473.234 kb on - strand, within Psyr_3756 at 4473.239 kb on + strand, within Psyr_3756 at 4473.240 kb on - strand, within Psyr_3756 at 4473.261 kb on - strand, within Psyr_3756 at 4473.261 kb on - strand, within Psyr_3756 at 4473.575 kb on + strand, within Psyr_3756 at 4473.575 kb on + strand, within Psyr_3756 at 4473.575 kb on + strand, within Psyr_3756 at 4473.575 kb on + strand, within Psyr_3756 at 4473.575 kb on + strand, within Psyr_3756 at 4473.576 kb on - strand, within Psyr_3756 at 4473.576 kb on - strand, within Psyr_3756 at 4473.576 kb on - strand, within Psyr_3756 at 4473.576 kb on - strand, within Psyr_3756 at 4473.576 kb on - strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.768 kb on - strand, within Psyr_3756 at 4473.768 kb on - strand, within Psyr_3756 at 4473.768 kb on - strand at 4473.768 kb on - strand, within Psyr_3756 at 4473.824 kb on - strand, within Psyr_3756 at 4473.842 kb on + strand, within Psyr_3756 at 4473.843 kb on - strand, within Psyr_3756 at 4473.843 kb on - strand, within Psyr_3756 at 4473.869 kb on + strand, within Psyr_3756 at 4473.870 kb on - strand, within Psyr_3756 at 4473.870 kb on - strand, within Psyr_3756 at 4473.870 kb on - strand, within Psyr_3756 at 4473.870 kb on - strand, within Psyr_3756 at 4473.885 kb on + strand, within Psyr_3756 at 4473.911 kb on + strand, within Psyr_3756 at 4473.911 kb on + strand, within Psyr_3756 at 4473.911 kb on + strand, within Psyr_3756 at 4473.911 kb on + strand, within Psyr_3756 at 4473.911 kb on + strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.968 kb on + strand, within Psyr_3756 at 4473.968 kb on + strand, within Psyr_3756 at 4473.968 kb on + strand, within Psyr_3756 at 4473.969 kb on - strand, within Psyr_3756 at 4473.971 kb on + strand, within Psyr_3756 at 4473.971 kb on + strand, within Psyr_3756 at 4473.971 kb on + strand, within Psyr_3756 at 4473.972 kb on - strand, within Psyr_3756 at 4473.972 kb on - strand, within Psyr_3756 at 4474.008 kb on - strand at 4474.016 kb on + strand at 4474.016 kb on + strand at 4474.016 kb on + strand at 4474.016 kb on + strand at 4474.017 kb on - strand at 4474.017 kb on - strand at 4474.017 kb on - strand at 4474.017 kb on - strand at 4474.017 kb on - strand at 4474.017 kb on - strand at 4474.228 kb on + strand, within Psyr_3757 at 4474.228 kb on + strand, within Psyr_3757 at 4474.228 kb on + strand, within Psyr_3757 at 4474.228 kb on + strand, within Psyr_3757 at 4474.228 kb on + strand, within Psyr_3757 at 4474.228 kb on + strand, within Psyr_3757 at 4474.228 kb on + strand, within Psyr_3757 at 4474.228 kb on + strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.242 kb on + strand, within Psyr_3757 at 4474.290 kb on - strand, within Psyr_3757 at 4474.308 kb on + strand, within Psyr_3757 at 4474.308 kb on + strand, within Psyr_3757 at 4474.308 kb on + strand, within Psyr_3757 at 4474.309 kb on - strand, within Psyr_3757 at 4474.309 kb on - strand, within Psyr_3757 at 4474.309 kb on - strand, within Psyr_3757 at 4474.363 kb on + strand, within Psyr_3757 at 4474.364 kb on - strand, within Psyr_3757 at 4474.456 kb on + strand at 4474.456 kb on + strand at 4474.456 kb on + strand at 4474.456 kb on + strand at 4474.456 kb on + strand at 4474.456 kb on + strand at 4474.456 kb on + strand at 4474.457 kb on - strand at 4474.508 kb on + strand at 4474.509 kb on - strand at 4474.519 kb on - strand at 4474.550 kb on + strand at 4474.550 kb on + strand at 4474.550 kb on + strand at 4474.551 kb on - strand at 4474.551 kb on - strand at 4474.551 kb on - strand at 4474.551 kb on - strand at 4474.553 kb on + strand at 4474.554 kb on - strand at 4474.554 kb on - strand at 4474.556 kb on + strand at 4474.556 kb on + strand at 4474.556 kb on + strand at 4474.557 kb on - strand at 4474.567 kb on + strand at 4474.567 kb on + strand at 4474.567 kb on + strand at 4474.568 kb on - strand at 4474.573 kb on + strand at 4474.573 kb on + strand at 4474.573 kb on + strand at 4474.573 kb on + strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.577 kb on + strand at 4474.577 kb on + strand at 4474.577 kb on + strand at 4474.577 kb on + strand at 4474.578 kb on - strand at 4474.578 kb on - strand at 4474.578 kb on - strand at 4474.578 kb on - strand at 4474.578 kb on - strand at 4474.708 kb on + strand at 4474.708 kb on + strand at 4474.921 kb on + strand, within Psyr_3758 at 4475.069 kb on + strand, within Psyr_3758 at 4475.069 kb on + strand at 4475.070 kb on - strand, within Psyr_3758 at 4475.071 kb on + strand, within Psyr_3758 at 4475.072 kb on - strand, within Psyr_3758
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mexicanolide 10 mM remove 4,471,559 + +1.1 4,471,559 + +0.0 4,471,580 + Psyr_3754 0.12 +0.2 4,471,580 + Psyr_3754 0.12 +0.6 4,471,580 + Psyr_3754 0.12 -0.6 4,471,580 + Psyr_3754 0.12 +0.3 4,471,627 + Psyr_3754 0.24 -0.3 4,471,670 + Psyr_3754 0.36 -0.9 4,471,670 + Psyr_3754 0.36 -0.1 4,471,695 - Psyr_3754 0.42 +0.5 4,471,751 + Psyr_3754 0.57 -0.5 4,471,751 + Psyr_3754 0.57 -0.4 4,471,752 - Psyr_3754 0.57 -0.7 4,471,828 + Psyr_3754 0.77 +0.9 4,471,867 + Psyr_3754 0.87 -0.2 4,471,867 + Psyr_3754 0.87 -0.0 4,471,867 + Psyr_3754 0.87 +0.8 4,471,868 - Psyr_3754 0.88 +0.5 4,471,868 - Psyr_3754 0.88 +0.6 4,472,196 + -1.0 4,472,201 - -0.4 4,472,201 - -0.2 4,472,207 - -0.5 4,472,207 - -0.3 4,472,211 + -0.0 4,472,212 - +0.0 4,472,248 + Psyr_3755 0.13 +1.1 4,472,272 - Psyr_3755 0.28 +0.7 4,472,315 + Psyr_3755 0.55 +0.8 4,472,382 + +0.8 4,472,382 + -0.9 4,472,382 + +0.4 4,472,382 + +0.8 4,472,383 - -1.3 4,472,411 + +2.5 4,472,412 - +1.3 4,472,412 - +0.2 4,472,412 - -1.0 4,472,413 + -0.6 4,472,413 + -0.9 4,472,413 + +0.1 4,472,413 + -0.2 4,472,413 + -1.7 4,472,413 + -0.4 4,472,414 - -0.1 4,472,414 - +0.0 4,472,414 - +0.2 4,472,421 - -0.1 4,472,507 + -0.4 4,472,508 - +2.1 4,472,508 - +0.1 4,472,565 - +1.3 4,472,625 + +0.1 4,472,625 + -1.9 4,472,630 - -0.5 4,472,630 - +0.1 4,472,801 + Psyr_3756 0.18 +1.0 4,472,801 + Psyr_3756 0.18 +0.2 4,472,801 + Psyr_3756 0.18 +0.6 4,472,801 + Psyr_3756 0.18 +0.8 4,472,802 - Psyr_3756 0.18 +0.1 4,472,996 + Psyr_3756 0.30 +1.7 4,472,996 + Psyr_3756 0.30 -0.1 4,472,996 + Psyr_3756 0.30 -1.4 4,472,996 + Psyr_3756 0.30 +0.7 4,472,996 + Psyr_3756 0.30 +1.6 4,472,996 + Psyr_3756 0.30 -0.4 4,472,997 - Psyr_3756 0.30 -0.3 4,472,997 - Psyr_3756 0.30 +0.3 4,472,997 - Psyr_3756 0.30 +0.5 4,472,997 - Psyr_3756 0.30 +1.1 4,472,997 - Psyr_3756 0.30 +0.6 4,472,997 - Psyr_3756 0.30 -1.2 4,473,233 + Psyr_3756 0.44 -0.7 4,473,233 + Psyr_3756 0.44 -0.9 4,473,233 + Psyr_3756 0.44 +1.6 4,473,234 - Psyr_3756 0.44 +0.5 4,473,239 + Psyr_3756 0.44 +0.6 4,473,240 - Psyr_3756 0.44 +0.3 4,473,261 - Psyr_3756 0.46 -0.2 4,473,261 - Psyr_3756 0.46 +0.3 4,473,575 + Psyr_3756 0.64 +0.0 4,473,575 + Psyr_3756 0.64 +0.7 4,473,575 + Psyr_3756 0.64 +0.9 4,473,575 + Psyr_3756 0.64 +1.3 4,473,575 + Psyr_3756 0.64 -0.6 4,473,576 - Psyr_3756 0.64 -0.3 4,473,576 - Psyr_3756 0.64 +0.9 4,473,576 - Psyr_3756 0.64 -0.2 4,473,576 - Psyr_3756 0.64 +0.1 4,473,576 - Psyr_3756 0.64 +0.4 4,473,767 + Psyr_3756 0.76 +0.1 4,473,767 + Psyr_3756 0.76 +1.3 4,473,767 + Psyr_3756 0.76 +0.9 4,473,767 + Psyr_3756 0.76 +0.7 4,473,767 + Psyr_3756 0.76 +0.4 4,473,767 + Psyr_3756 0.76 +0.3 4,473,767 + Psyr_3756 0.76 +0.6 4,473,767 + Psyr_3756 0.76 +0.0 4,473,767 + Psyr_3756 0.76 -0.4 4,473,767 + Psyr_3756 0.76 +0.8 4,473,768 - Psyr_3756 0.76 +1.4 4,473,768 - Psyr_3756 0.76 +0.1 4,473,768 - -1.2 4,473,768 - Psyr_3756 0.76 +0.2 4,473,824 - Psyr_3756 0.79 +0.0 4,473,842 + Psyr_3756 0.81 -0.4 4,473,843 - Psyr_3756 0.81 -1.1 4,473,843 - Psyr_3756 0.81 +0.6 4,473,869 + Psyr_3756 0.82 -0.0 4,473,870 - Psyr_3756 0.82 +0.7 4,473,870 - Psyr_3756 0.82 -0.6 4,473,870 - Psyr_3756 0.82 -0.4 4,473,870 - Psyr_3756 0.82 +0.4 4,473,885 + Psyr_3756 0.83 +0.8 4,473,911 + Psyr_3756 0.85 +0.2 4,473,911 + Psyr_3756 0.85 -1.2 4,473,911 + Psyr_3756 0.85 -0.0 4,473,911 + Psyr_3756 0.85 -1.6 4,473,911 + Psyr_3756 0.85 +0.1 4,473,912 - Psyr_3756 0.85 +1.6 4,473,912 - Psyr_3756 0.85 -0.4 4,473,912 - Psyr_3756 0.85 +0.4 4,473,912 - Psyr_3756 0.85 -0.2 4,473,912 - Psyr_3756 0.85 -0.1 4,473,912 - Psyr_3756 0.85 +0.1 4,473,912 - Psyr_3756 0.85 -0.7 4,473,912 - Psyr_3756 0.85 +0.3 4,473,912 - Psyr_3756 0.85 +0.4 4,473,968 + Psyr_3756 0.88 +0.6 4,473,968 + Psyr_3756 0.88 +2.7 4,473,968 + Psyr_3756 0.88 -1.7 4,473,969 - Psyr_3756 0.88 -1.3 4,473,971 + Psyr_3756 0.88 +0.2 4,473,971 + Psyr_3756 0.88 +1.4 4,473,971 + Psyr_3756 0.88 -0.2 4,473,972 - Psyr_3756 0.88 -0.9 4,473,972 - Psyr_3756 0.88 -1.0 4,474,008 - -1.1 4,474,016 + -0.3 4,474,016 + +0.6 4,474,016 + +1.6 4,474,016 + -1.0 4,474,017 - -0.0 4,474,017 - -0.6 4,474,017 - -0.3 4,474,017 - -0.2 4,474,017 - +0.4 4,474,017 - -0.4 4,474,228 + Psyr_3757 0.21 -0.3 4,474,228 + Psyr_3757 0.21 -0.2 4,474,228 + Psyr_3757 0.21 +0.5 4,474,228 + Psyr_3757 0.21 +2.5 4,474,228 + Psyr_3757 0.21 -0.6 4,474,228 + Psyr_3757 0.21 -0.9 4,474,228 + Psyr_3757 0.21 +0.2 4,474,228 + Psyr_3757 0.21 -0.4 4,474,229 - Psyr_3757 0.22 -2.0 4,474,229 - Psyr_3757 0.22 +1.0 4,474,229 - Psyr_3757 0.22 +0.1 4,474,229 - Psyr_3757 0.22 -0.2 4,474,229 - Psyr_3757 0.22 -0.2 4,474,229 - Psyr_3757 0.22 -0.2 4,474,229 - Psyr_3757 0.22 -0.9 4,474,229 - Psyr_3757 0.22 +0.5 4,474,229 - Psyr_3757 0.22 -0.1 4,474,229 - Psyr_3757 0.22 -0.4 4,474,229 - Psyr_3757 0.22 -0.2 4,474,229 - Psyr_3757 0.22 -0.1 4,474,229 - Psyr_3757 0.22 +0.1 4,474,242 + Psyr_3757 0.26 +0.8 4,474,290 - Psyr_3757 0.41 +0.3 4,474,308 + Psyr_3757 0.47 -0.7 4,474,308 + Psyr_3757 0.47 +1.3 4,474,308 + Psyr_3757 0.47 +1.1 4,474,309 - Psyr_3757 0.47 -0.9 4,474,309 - Psyr_3757 0.47 +2.3 4,474,309 - Psyr_3757 0.47 +0.3 4,474,363 + Psyr_3757 0.65 -2.2 4,474,364 - Psyr_3757 0.65 -0.0 4,474,456 + -0.7 4,474,456 + +0.6 4,474,456 + +0.8 4,474,456 + -1.3 4,474,456 + -1.4 4,474,456 + -0.1 4,474,456 + +0.3 4,474,457 - +1.1 4,474,508 + -0.2 4,474,509 - -0.4 4,474,519 - +0.5 4,474,550 + +0.5 4,474,550 + +0.9 4,474,550 + +0.3 4,474,551 - -0.6 4,474,551 - -0.1 4,474,551 - -1.8 4,474,551 - -0.2 4,474,553 + -0.2 4,474,554 - -0.1 4,474,554 - +1.0 4,474,556 + +0.4 4,474,556 + -0.1 4,474,556 + -0.6 4,474,557 - -0.1 4,474,567 + +0.5 4,474,567 + +2.1 4,474,567 + -0.6 4,474,568 - -0.4 4,474,573 + -0.0 4,474,573 + -0.3 4,474,573 + +0.3 4,474,573 + +0.5 4,474,574 - +0.1 4,474,574 - -0.7 4,474,574 - +0.7 4,474,574 - +0.5 4,474,574 - +0.3 4,474,574 - -0.1 4,474,574 - -0.7 4,474,574 - +0.0 4,474,574 - +0.3 4,474,577 + +0.0 4,474,577 + -1.2 4,474,577 + -0.1 4,474,577 + -0.8 4,474,578 - -0.6 4,474,578 - -0.3 4,474,578 - +0.0 4,474,578 - +1.1 4,474,578 - +0.2 4,474,708 + -0.2 4,474,708 + -0.6 4,474,921 + Psyr_3758 0.25 -1.4 4,475,069 + Psyr_3758 0.42 -0.2 4,475,069 + +3.7 4,475,070 - Psyr_3758 0.42 -1.1 4,475,071 + Psyr_3758 0.43 -0.2 4,475,072 - Psyr_3758 0.43 -0.4
Or see this region's nucleotide sequence