Experiment: KB with Mexicanolide 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3624 and Psyr_3625 overlap by 11 nucleotides Psyr_3625 and Psyr_3626 are separated by 204 nucleotides Psyr_3626 and Psyr_3627 are separated by 190 nucleotides Psyr_3627 and Psyr_3628 are separated by 102 nucleotides
Psyr_3624: Psyr_3624 - transcriptional regulator, LysR family, at 4,307,764 to 4,308,654
_3624
Psyr_3625: Psyr_3625 - Protein of unknown function DUF81, at 4,308,644 to 4,309,375
_3625
Psyr_3626: Psyr_3626 - transcriptional regulator, MarR family, at 4,309,580 to 4,310,053
_3626
Psyr_3627: Psyr_3627 - OsmC-like protein, at 4,310,244 to 4,310,663
_3627
Psyr_3628: Psyr_3628 - translation elongation factor P (EF-P), at 4,310,766 to 4,311,335
_3628
Position (kb) 4309
4310
4311 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4308.628 kb on + strand at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.174 kb on + strand, within Psyr_3625 at 4309.203 kb on + strand, within Psyr_3625 at 4309.423 kb on + strand at 4309.517 kb on - strand at 4309.517 kb on - strand at 4309.543 kb on + strand at 4309.543 kb on + strand at 4309.543 kb on + strand at 4309.544 kb on - strand at 4309.544 kb on - strand at 4309.544 kb on - strand at 4309.548 kb on + strand at 4309.549 kb on - strand at 4309.579 kb on + strand at 4309.580 kb on - strand at 4309.664 kb on + strand, within Psyr_3626 at 4309.665 kb on - strand, within Psyr_3626 at 4309.665 kb on - strand, within Psyr_3626 at 4309.694 kb on + strand, within Psyr_3626 at 4309.695 kb on - strand, within Psyr_3626 at 4309.695 kb on - strand, within Psyr_3626 at 4309.727 kb on + strand, within Psyr_3626 at 4309.728 kb on - strand, within Psyr_3626 at 4309.736 kb on + strand, within Psyr_3626 at 4309.950 kb on + strand, within Psyr_3626 at 4310.172 kb on + strand at 4310.256 kb on + strand at 4310.256 kb on + strand at 4310.404 kb on - strand, within Psyr_3627 at 4310.491 kb on + strand, within Psyr_3627 at 4310.491 kb on + strand, within Psyr_3627 at 4310.610 kb on + strand, within Psyr_3627 at 4310.653 kb on + strand at 4310.654 kb on - strand at 4310.767 kb on + strand at 4310.767 kb on + strand at 4310.767 kb on + strand at 4310.767 kb on + strand at 4310.767 kb on + strand at 4310.767 kb on + strand at 4310.767 kb on + strand at 4310.767 kb on + strand at 4310.768 kb on - strand at 4310.768 kb on - strand at 4310.768 kb on - strand at 4310.768 kb on - strand at 4310.768 kb on - strand at 4310.768 kb on - strand at 4310.768 kb on - strand at 4310.768 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mexicanolide 10 mM remove 4,308,628 + +0.4 4,308,816 + Psyr_3625 0.23 -0.3 4,308,816 + Psyr_3625 0.23 -1.6 4,308,816 + Psyr_3625 0.23 +1.1 4,308,816 + Psyr_3625 0.23 -1.5 4,308,816 + Psyr_3625 0.23 +0.9 4,308,817 - Psyr_3625 0.24 -0.1 4,308,817 - Psyr_3625 0.24 +1.1 4,309,032 + Psyr_3625 0.53 -1.4 4,309,032 + Psyr_3625 0.53 -1.5 4,309,032 + Psyr_3625 0.53 -0.9 4,309,032 + Psyr_3625 0.53 +0.6 4,309,033 - Psyr_3625 0.53 +0.5 4,309,033 - Psyr_3625 0.53 +0.6 4,309,033 - Psyr_3625 0.53 -0.6 4,309,033 - Psyr_3625 0.53 +2.4 4,309,174 + Psyr_3625 0.72 +0.4 4,309,203 + Psyr_3625 0.76 -0.2 4,309,423 + +0.1 4,309,517 - -0.5 4,309,517 - +0.2 4,309,543 + -0.4 4,309,543 + -0.3 4,309,543 + +1.2 4,309,544 - -0.9 4,309,544 - -0.5 4,309,544 - -0.4 4,309,548 + -0.1 4,309,549 - +0.7 4,309,579 + -2.1 4,309,580 - -1.5 4,309,664 + Psyr_3626 0.18 -0.9 4,309,665 - Psyr_3626 0.18 -1.2 4,309,665 - Psyr_3626 0.18 -0.5 4,309,694 + Psyr_3626 0.24 +1.5 4,309,695 - Psyr_3626 0.24 -1.2 4,309,695 - Psyr_3626 0.24 +0.7 4,309,727 + Psyr_3626 0.31 -0.8 4,309,728 - Psyr_3626 0.31 -0.7 4,309,736 + Psyr_3626 0.33 -1.3 4,309,950 + Psyr_3626 0.78 -0.7 4,310,172 + +0.3 4,310,256 + +1.1 4,310,256 + +0.3 4,310,404 - Psyr_3627 0.38 -1.3 4,310,491 + Psyr_3627 0.59 +0.2 4,310,491 + Psyr_3627 0.59 +2.0 4,310,610 + Psyr_3627 0.87 +0.5 4,310,653 + -0.4 4,310,654 - +1.1 4,310,767 + +0.3 4,310,767 + -0.1 4,310,767 + +1.1 4,310,767 + -0.4 4,310,767 + -0.5 4,310,767 + +0.3 4,310,767 + -1.4 4,310,767 + -1.2 4,310,768 - +1.1 4,310,768 - -2.7 4,310,768 - -0.4 4,310,768 - -0.2 4,310,768 - -0.4 4,310,768 - -0.5 4,310,768 - +0.6 4,310,768 - -0.0
Or see this region's nucleotide sequence