Experiment: KB with Mexicanolide 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3357 and Psyr_3358 are separated by 99 nucleotides Psyr_3358 and Psyr_3359 are separated by 102 nucleotides Psyr_3359 and Psyr_3360 are separated by 6 nucleotides
Psyr_3357: Psyr_3357 - transcriptional regulator, LysR family, at 4,015,162 to 4,016,046
_3357
Psyr_3358: Psyr_3358 - transmembrane pair, at 4,016,146 to 4,016,625
_3358
Psyr_3359: Psyr_3359 - Phenazine biosynthesis PhzC/PhzF protein, at 4,016,728 to 4,017,561
_3359
Psyr_3360: Psyr_3360 - Major facilitator superfamily, at 4,017,568 to 4,018,719
_3360
Position (kb) 4016
4017 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4015.376 kb on + strand, within Psyr_3357 at 4015.376 kb on + strand, within Psyr_3357 at 4015.376 kb on + strand, within Psyr_3357 at 4015.377 kb on - strand, within Psyr_3357 at 4015.450 kb on - strand, within Psyr_3357 at 4015.450 kb on - strand, within Psyr_3357 at 4016.040 kb on - strand at 4016.040 kb on - strand at 4016.141 kb on + strand at 4016.141 kb on + strand at 4016.141 kb on + strand at 4016.141 kb on + strand at 4016.141 kb on + strand at 4016.141 kb on + strand at 4016.141 kb on + strand at 4016.141 kb on + strand at 4016.141 kb on + strand at 4016.142 kb on - strand at 4016.142 kb on - strand at 4016.142 kb on - strand at 4016.142 kb on - strand at 4016.142 kb on - strand at 4016.142 kb on - strand at 4016.145 kb on + strand at 4016.146 kb on - strand at 4016.152 kb on - strand at 4016.353 kb on + strand, within Psyr_3358 at 4016.353 kb on + strand, within Psyr_3358 at 4016.354 kb on - strand, within Psyr_3358 at 4016.354 kb on - strand, within Psyr_3358 at 4016.484 kb on + strand, within Psyr_3358 at 4016.546 kb on - strand, within Psyr_3358 at 4016.623 kb on + strand at 4016.623 kb on + strand at 4016.624 kb on - strand at 4016.624 kb on - strand at 4016.624 kb on - strand at 4016.624 kb on - strand at 4016.703 kb on - strand at 4016.725 kb on - strand at 4016.725 kb on - strand at 4016.725 kb on - strand at 4016.725 kb on - strand at 4016.725 kb on - strand at 4016.725 kb on - strand at 4016.741 kb on + strand at 4016.741 kb on + strand at 4016.741 kb on + strand at 4017.106 kb on - strand, within Psyr_3359 at 4017.144 kb on + strand, within Psyr_3359 at 4017.144 kb on + strand, within Psyr_3359 at 4017.144 kb on + strand, within Psyr_3359 at 4017.144 kb on + strand, within Psyr_3359 at 4017.144 kb on + strand, within Psyr_3359 at 4017.144 kb on + strand, within Psyr_3359 at 4017.184 kb on - strand, within Psyr_3359 at 4017.370 kb on + strand, within Psyr_3359 at 4017.452 kb on + strand, within Psyr_3359 at 4017.453 kb on - strand, within Psyr_3359 at 4017.460 kb on - strand, within Psyr_3359 at 4017.460 kb on - strand, within Psyr_3359 at 4017.559 kb on + strand at 4017.560 kb on - strand at 4017.560 kb on - strand at 4017.560 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mexicanolide 10 mM remove 4,015,376 + Psyr_3357 0.24 +1.1 4,015,376 + Psyr_3357 0.24 +0.2 4,015,376 + Psyr_3357 0.24 +0.3 4,015,377 - Psyr_3357 0.24 -0.6 4,015,450 - Psyr_3357 0.33 +0.1 4,015,450 - Psyr_3357 0.33 -1.3 4,016,040 - +0.1 4,016,040 - +0.6 4,016,141 + -0.7 4,016,141 + +0.2 4,016,141 + +1.5 4,016,141 + +0.1 4,016,141 + +0.2 4,016,141 + -0.4 4,016,141 + +1.1 4,016,141 + -2.6 4,016,141 + +1.1 4,016,142 - +0.3 4,016,142 - +0.2 4,016,142 - -0.6 4,016,142 - -1.1 4,016,142 - +1.1 4,016,142 - +0.3 4,016,145 + +0.2 4,016,146 - -1.0 4,016,152 - +0.7 4,016,353 + Psyr_3358 0.43 -1.3 4,016,353 + Psyr_3358 0.43 -0.3 4,016,354 - Psyr_3358 0.43 -0.3 4,016,354 - Psyr_3358 0.43 -0.9 4,016,484 + Psyr_3358 0.70 +0.1 4,016,546 - Psyr_3358 0.83 -0.8 4,016,623 + +1.0 4,016,623 + -0.0 4,016,624 - -0.2 4,016,624 - -0.0 4,016,624 - +0.5 4,016,624 - -0.6 4,016,703 - +0.0 4,016,725 - +0.1 4,016,725 - +0.3 4,016,725 - -0.4 4,016,725 - -0.9 4,016,725 - -0.5 4,016,725 - -0.5 4,016,741 + -0.4 4,016,741 + +1.3 4,016,741 + -1.1 4,017,106 - Psyr_3359 0.45 +0.2 4,017,144 + Psyr_3359 0.50 +0.3 4,017,144 + Psyr_3359 0.50 -1.0 4,017,144 + Psyr_3359 0.50 -0.4 4,017,144 + Psyr_3359 0.50 -0.4 4,017,144 + Psyr_3359 0.50 -0.9 4,017,144 + Psyr_3359 0.50 +0.6 4,017,184 - Psyr_3359 0.55 +0.1 4,017,370 + Psyr_3359 0.77 +2.1 4,017,452 + Psyr_3359 0.87 -0.5 4,017,453 - Psyr_3359 0.87 -1.0 4,017,460 - Psyr_3359 0.88 -0.4 4,017,460 - Psyr_3359 0.88 -0.9 4,017,559 + +0.4 4,017,560 - +0.7 4,017,560 - -1.9 4,017,560 - -0.2
Or see this region's nucleotide sequence