Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3008

Experiment: KB with Mexicanolide 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3005 and Psyr_3006 are separated by 126 nucleotidesPsyr_3006 and Psyr_3007 overlap by 6 nucleotidesPsyr_3007 and Psyr_3008 overlap by 4 nucleotidesPsyr_3008 and Psyr_3009 are separated by 251 nucleotidesPsyr_3009 and Psyr_3010 overlap by 4 nucleotides Psyr_3005: Psyr_3005 - 3-oxoadipate enol-lactonase, at 3,600,896 to 3,601,687 _3005 Psyr_3006: Psyr_3006 - Protein of unknown function DUF419, at 3,601,814 to 3,602,182 _3006 Psyr_3007: Psyr_3007 - Protein of unknown function DUF1294, at 3,602,177 to 3,602,611 _3007 Psyr_3008: Psyr_3008 - Undecaprenyl-diphosphatase, at 3,602,608 to 3,603,438 _3008 Psyr_3009: Psyr_3009 - Nicotinamide mononucleotide transporter PnuC, at 3,603,690 to 3,604,253 _3009 Psyr_3010: Psyr_3010 - nicotinamide-nucleotide adenylyltransferase, putative, at 3,604,250 to 3,604,795 _3010 Position (kb) 3602 3603 3604Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3601.651 kb on - strandat 3601.720 kb on + strandat 3601.721 kb on - strandat 3601.721 kb on - strandat 3601.740 kb on + strandat 3601.740 kb on + strandat 3601.740 kb on + strandat 3601.740 kb on + strandat 3601.741 kb on - strandat 3601.741 kb on - strandat 3601.741 kb on - strandat 3601.741 kb on - strandat 3601.741 kb on - strandat 3601.741 kb on - strandat 3601.741 kb on - strandat 3601.741 kb on - strandat 3601.741 kb on - strandat 3601.741 kb on - strandat 3601.741 kb on - strandat 3601.741 kb on - strandat 3601.895 kb on + strand, within Psyr_3006at 3601.895 kb on + strand, within Psyr_3006at 3601.895 kb on + strand, within Psyr_3006at 3601.896 kb on - strand, within Psyr_3006at 3601.896 kb on - strand, within Psyr_3006at 3601.896 kb on - strand, within Psyr_3006at 3602.028 kb on + strand, within Psyr_3006at 3602.028 kb on + strand, within Psyr_3006at 3602.029 kb on - strand, within Psyr_3006at 3602.029 kb on - strand, within Psyr_3006at 3602.079 kb on + strand, within Psyr_3006at 3602.079 kb on + strand, within Psyr_3006at 3602.178 kb on + strandat 3602.178 kb on + strandat 3602.178 kb on + strandat 3602.178 kb on + strandat 3602.178 kb on + strandat 3602.178 kb on + strandat 3602.179 kb on - strandat 3602.179 kb on - strandat 3602.179 kb on - strandat 3602.179 kb on - strandat 3602.265 kb on - strand, within Psyr_3007at 3602.265 kb on - strand, within Psyr_3007at 3602.502 kb on + strand, within Psyr_3007at 3602.702 kb on + strand, within Psyr_3008at 3602.703 kb on - strand, within Psyr_3008at 3602.703 kb on - strand, within Psyr_3008at 3602.820 kb on - strand, within Psyr_3008at 3602.820 kb on - strand, within Psyr_3008at 3602.825 kb on + strand, within Psyr_3008at 3602.834 kb on + strand, within Psyr_3008at 3602.834 kb on + strand, within Psyr_3008at 3602.834 kb on + strand, within Psyr_3008at 3602.835 kb on - strand, within Psyr_3008at 3602.835 kb on - strand, within Psyr_3008at 3602.974 kb on + strand, within Psyr_3008at 3602.974 kb on + strand, within Psyr_3008at 3602.974 kb on + strand, within Psyr_3008at 3602.975 kb on - strand, within Psyr_3008at 3602.984 kb on - strand, within Psyr_3008at 3603.009 kb on + strand, within Psyr_3008at 3603.009 kb on + strand, within Psyr_3008at 3603.010 kb on - strand, within Psyr_3008at 3603.010 kb on - strand, within Psyr_3008at 3603.010 kb on - strand, within Psyr_3008at 3603.262 kb on + strand, within Psyr_3008at 3603.395 kb on - strandat 3603.395 kb on - strandat 3603.395 kb on - strandat 3603.395 kb on - strandat 3603.407 kb on - strandat 3603.513 kb on + strandat 3603.513 kb on + strandat 3603.513 kb on + strandat 3603.514 kb on - strandat 3603.514 kb on - strandat 3603.568 kb on - strandat 3603.599 kb on + strandat 3603.600 kb on - strandat 3603.600 kb on - strandat 3603.600 kb on - strandat 3603.600 kb on - strandat 3603.644 kb on + strandat 3603.644 kb on + strandat 3603.644 kb on + strandat 3603.645 kb on - strandat 3603.645 kb on - strandat 3603.645 kb on - strandat 3603.798 kb on + strand, within Psyr_3009at 3603.798 kb on + strand, within Psyr_3009at 3603.798 kb on + strand, within Psyr_3009at 3603.799 kb on - strand, within Psyr_3009at 3603.799 kb on - strand, within Psyr_3009at 3603.799 kb on - strand, within Psyr_3009at 3603.799 kb on - strand, within Psyr_3009at 3603.799 kb on - strand, within Psyr_3009at 3603.799 kb on - strand, within Psyr_3009at 3603.799 kb on - strand, within Psyr_3009at 3603.829 kb on - strand, within Psyr_3009at 3603.855 kb on + strand, within Psyr_3009at 3603.855 kb on + strand, within Psyr_3009at 3603.856 kb on - strand, within Psyr_3009at 3603.856 kb on - strand, within Psyr_3009at 3603.873 kb on + strand, within Psyr_3009at 3603.873 kb on + strand, within Psyr_3009at 3603.873 kb on + strand, within Psyr_3009at 3603.873 kb on + strand, within Psyr_3009at 3604.152 kb on + strand, within Psyr_3009at 3604.152 kb on + strand, within Psyr_3009at 3604.152 kb on + strand, within Psyr_3009at 3604.152 kb on + strand, within Psyr_3009at 3604.153 kb on - strand, within Psyr_3009at 3604.164 kb on + strand, within Psyr_3009at 3604.165 kb on - strand, within Psyr_3009at 3604.165 kb on - strand, within Psyr_3009at 3604.182 kb on + strand, within Psyr_3009at 3604.183 kb on - strand, within Psyr_3009at 3604.311 kb on + strand, within Psyr_3010at 3604.311 kb on + strand, within Psyr_3010at 3604.311 kb on + strand, within Psyr_3010at 3604.311 kb on + strand, within Psyr_3010at 3604.311 kb on + strand, within Psyr_3010at 3604.312 kb on - strand, within Psyr_3010at 3604.312 kb on - strand, within Psyr_3010at 3604.318 kb on + strand, within Psyr_3010at 3604.318 kb on + strand, within Psyr_3010at 3604.318 kb on + strand, within Psyr_3010at 3604.318 kb on + strand, within Psyr_3010at 3604.318 kb on + strand, within Psyr_3010at 3604.318 kb on + strand, within Psyr_3010at 3604.319 kb on - strandat 3604.319 kb on - strand, within Psyr_3010at 3604.319 kb on - strand, within Psyr_3010at 3604.346 kb on + strand, within Psyr_3010at 3604.346 kb on + strand, within Psyr_3010at 3604.347 kb on - strand, within Psyr_3010

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mexicanolide 10 mM
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3,601,651 - -0.2
3,601,720 + +0.2
3,601,721 - +0.3
3,601,721 - -0.4
3,601,740 + -1.9
3,601,740 + +1.0
3,601,740 + -1.5
3,601,740 + +0.5
3,601,741 - -0.4
3,601,741 - +0.4
3,601,741 - +1.4
3,601,741 - -0.5
3,601,741 - +0.1
3,601,741 - +0.3
3,601,741 - +0.7
3,601,741 - -0.5
3,601,741 - +0.8
3,601,741 - -1.7
3,601,741 - +0.1
3,601,741 - +0.6
3,601,895 + Psyr_3006 0.22 +1.7
3,601,895 + Psyr_3006 0.22 -0.1
3,601,895 + Psyr_3006 0.22 +0.5
3,601,896 - Psyr_3006 0.22 +0.3
3,601,896 - Psyr_3006 0.22 -0.7
3,601,896 - Psyr_3006 0.22 +1.4
3,602,028 + Psyr_3006 0.58 -0.5
3,602,028 + Psyr_3006 0.58 +0.4
3,602,029 - Psyr_3006 0.58 +0.7
3,602,029 - Psyr_3006 0.58 -0.1
3,602,079 + Psyr_3006 0.72 +0.6
3,602,079 + Psyr_3006 0.72 -1.0
3,602,178 + -0.6
3,602,178 + -0.3
3,602,178 + -1.5
3,602,178 + -0.2
3,602,178 + +0.7
3,602,178 + +0.1
3,602,179 - -2.0
3,602,179 - +1.7
3,602,179 - -1.1
3,602,179 - -0.7
3,602,265 - Psyr_3007 0.20 +1.1
3,602,265 - Psyr_3007 0.20 -2.3
3,602,502 + Psyr_3007 0.75 -1.5
3,602,702 + Psyr_3008 0.11 -0.9
3,602,703 - Psyr_3008 0.11 -2.2
3,602,703 - Psyr_3008 0.11 -2.8
3,602,820 - Psyr_3008 0.26 -2.7
3,602,820 - Psyr_3008 0.26 -1.7
3,602,825 + Psyr_3008 0.26 -2.0
3,602,834 + Psyr_3008 0.27 -3.0
3,602,834 + Psyr_3008 0.27 -2.6
3,602,834 + Psyr_3008 0.27 -2.5
3,602,835 - Psyr_3008 0.27 -2.0
3,602,835 - Psyr_3008 0.27 -1.5
3,602,974 + Psyr_3008 0.44 -2.6
3,602,974 + Psyr_3008 0.44 -2.5
3,602,974 + Psyr_3008 0.44 -2.3
3,602,975 - Psyr_3008 0.44 -2.5
3,602,984 - Psyr_3008 0.45 -2.6
3,603,009 + Psyr_3008 0.48 -2.3
3,603,009 + Psyr_3008 0.48 -2.0
3,603,010 - Psyr_3008 0.48 -2.0
3,603,010 - Psyr_3008 0.48 -3.0
3,603,010 - Psyr_3008 0.48 -1.9
3,603,262 + Psyr_3008 0.79 -0.5
3,603,395 - -0.9
3,603,395 - -1.7
3,603,395 - -3.1
3,603,395 - -2.2
3,603,407 - -3.4
3,603,513 + -1.5
3,603,513 + -1.9
3,603,513 + -1.9
3,603,514 - -0.2
3,603,514 - +0.5
3,603,568 - -1.1
3,603,599 + +0.7
3,603,600 - +0.5
3,603,600 - +0.8
3,603,600 - -0.2
3,603,600 - -0.6
3,603,644 + +2.1
3,603,644 + +1.1
3,603,644 + +2.7
3,603,645 - -1.2
3,603,645 - -0.1
3,603,645 - -0.6
3,603,798 + Psyr_3009 0.19 -0.8
3,603,798 + Psyr_3009 0.19 +0.8
3,603,798 + Psyr_3009 0.19 +1.0
3,603,799 - Psyr_3009 0.19 +0.1
3,603,799 - Psyr_3009 0.19 -1.9
3,603,799 - Psyr_3009 0.19 -0.5
3,603,799 - Psyr_3009 0.19 +0.5
3,603,799 - Psyr_3009 0.19 -0.2
3,603,799 - Psyr_3009 0.19 -1.3
3,603,799 - Psyr_3009 0.19 -1.2
3,603,829 - Psyr_3009 0.25 -0.0
3,603,855 + Psyr_3009 0.29 +0.0
3,603,855 + Psyr_3009 0.29 +0.4
3,603,856 - Psyr_3009 0.29 +0.9
3,603,856 - Psyr_3009 0.29 +0.9
3,603,873 + Psyr_3009 0.32 -0.7
3,603,873 + Psyr_3009 0.32 -1.4
3,603,873 + Psyr_3009 0.32 -0.6
3,603,873 + Psyr_3009 0.32 -2.5
3,604,152 + Psyr_3009 0.82 -0.3
3,604,152 + Psyr_3009 0.82 +0.8
3,604,152 + Psyr_3009 0.82 +0.1
3,604,152 + Psyr_3009 0.82 +0.2
3,604,153 - Psyr_3009 0.82 -1.0
3,604,164 + Psyr_3009 0.84 -0.6
3,604,165 - Psyr_3009 0.84 -0.5
3,604,165 - Psyr_3009 0.84 -0.6
3,604,182 + Psyr_3009 0.87 -0.5
3,604,183 - Psyr_3009 0.87 -0.9
3,604,311 + Psyr_3010 0.11 +1.1
3,604,311 + Psyr_3010 0.11 +0.1
3,604,311 + Psyr_3010 0.11 +2.7
3,604,311 + Psyr_3010 0.11 -0.1
3,604,311 + Psyr_3010 0.11 +0.3
3,604,312 - Psyr_3010 0.11 -1.2
3,604,312 - Psyr_3010 0.11 +1.5
3,604,318 + Psyr_3010 0.12 -0.7
3,604,318 + Psyr_3010 0.12 -0.7
3,604,318 + Psyr_3010 0.12 -0.7
3,604,318 + Psyr_3010 0.12 -0.0
3,604,318 + Psyr_3010 0.12 +0.4
3,604,318 + Psyr_3010 0.12 -0.1
3,604,319 - +1.4
3,604,319 - Psyr_3010 0.13 -0.2
3,604,319 - Psyr_3010 0.13 -0.0
3,604,346 + Psyr_3010 0.18 -0.9
3,604,346 + Psyr_3010 0.18 +0.4
3,604,347 - Psyr_3010 0.18 +0.1

Or see this region's nucleotide sequence