Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2765

Experiment: KB with Mexicanolide 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2764 and Psyr_2765 overlap by 4 nucleotidesPsyr_2765 and Psyr_2766 are separated by 12 nucleotidesPsyr_2766 and Psyr_2767 overlap by 4 nucleotides Psyr_2764: Psyr_2764 - conserved hypothetical protein, at 3,351,260 to 3,352,504 _2764 Psyr_2765: Psyr_2765 - conserved domain protein, at 3,352,501 to 3,352,713 _2765 Psyr_2766: Psyr_2766 - conserved hypothetical protein, at 3,352,726 to 3,353,253 _2766 Psyr_2767: Psyr_2767 - Glycoside hydrolase, family 19, at 3,353,250 to 3,353,783 _2767 Position (kb) 3352 3353Strain fitness (log2 ratio) -2 -1 0 1 2at 3351.591 kb on - strand, within Psyr_2764at 3351.615 kb on + strand, within Psyr_2764at 3351.615 kb on + strand, within Psyr_2764at 3351.615 kb on + strand, within Psyr_2764at 3351.615 kb on + strand, within Psyr_2764at 3351.615 kb on + strand, within Psyr_2764at 3351.615 kb on + strand, within Psyr_2764at 3351.615 kb on + strand, within Psyr_2764at 3351.615 kb on + strand, within Psyr_2764at 3351.615 kb on + strand, within Psyr_2764at 3351.615 kb on + strand, within Psyr_2764at 3351.616 kb on - strand, within Psyr_2764at 3351.616 kb on - strand, within Psyr_2764at 3351.616 kb on - strand, within Psyr_2764at 3351.616 kb on - strand, within Psyr_2764at 3351.616 kb on - strand, within Psyr_2764at 3351.693 kb on + strand, within Psyr_2764at 3351.694 kb on - strand, within Psyr_2764at 3351.694 kb on - strand, within Psyr_2764at 3352.003 kb on + strand, within Psyr_2764at 3352.032 kb on + strand, within Psyr_2764at 3352.032 kb on + strand, within Psyr_2764at 3352.032 kb on + strand, within Psyr_2764at 3352.032 kb on + strand, within Psyr_2764at 3352.032 kb on + strand, within Psyr_2764at 3352.032 kb on + strand, within Psyr_2764at 3352.032 kb on + strand, within Psyr_2764at 3352.033 kb on - strand, within Psyr_2764at 3352.033 kb on - strand, within Psyr_2764at 3352.033 kb on - strand, within Psyr_2764at 3352.033 kb on - strand, within Psyr_2764at 3352.033 kb on - strand, within Psyr_2764at 3352.033 kb on - strand, within Psyr_2764at 3352.033 kb on - strand, within Psyr_2764at 3352.054 kb on - strand, within Psyr_2764at 3352.332 kb on + strand, within Psyr_2764at 3352.333 kb on - strand, within Psyr_2764at 3352.539 kb on + strand, within Psyr_2765at 3352.685 kb on + strand, within Psyr_2765at 3352.685 kb on + strand, within Psyr_2765at 3352.685 kb on + strand, within Psyr_2765at 3352.686 kb on - strand, within Psyr_2765at 3352.686 kb on - strand, within Psyr_2765at 3352.704 kb on + strandat 3352.716 kb on + strandat 3352.717 kb on - strandat 3352.738 kb on - strandat 3352.999 kb on - strand, within Psyr_2766at 3352.999 kb on - strand, within Psyr_2766at 3353.186 kb on + strand, within Psyr_2766at 3353.278 kb on + strandat 3353.480 kb on - strand, within Psyr_2767at 3353.546 kb on + strand, within Psyr_2767at 3353.686 kb on + strand, within Psyr_2767at 3353.687 kb on - strand, within Psyr_2767

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mexicanolide 10 mM
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3,351,591 - Psyr_2764 0.27 +1.3
3,351,615 + Psyr_2764 0.29 -0.2
3,351,615 + Psyr_2764 0.29 +2.3
3,351,615 + Psyr_2764 0.29 +0.3
3,351,615 + Psyr_2764 0.29 +0.5
3,351,615 + Psyr_2764 0.29 +0.3
3,351,615 + Psyr_2764 0.29 -0.1
3,351,615 + Psyr_2764 0.29 +0.1
3,351,615 + Psyr_2764 0.29 -1.1
3,351,615 + Psyr_2764 0.29 -1.0
3,351,615 + Psyr_2764 0.29 +2.5
3,351,616 - Psyr_2764 0.29 +1.3
3,351,616 - Psyr_2764 0.29 +2.3
3,351,616 - Psyr_2764 0.29 -2.0
3,351,616 - Psyr_2764 0.29 -0.8
3,351,616 - Psyr_2764 0.29 -0.3
3,351,693 + Psyr_2764 0.35 +0.5
3,351,694 - Psyr_2764 0.35 +0.1
3,351,694 - Psyr_2764 0.35 -0.8
3,352,003 + Psyr_2764 0.60 +1.6
3,352,032 + Psyr_2764 0.62 +0.2
3,352,032 + Psyr_2764 0.62 +0.9
3,352,032 + Psyr_2764 0.62 -0.8
3,352,032 + Psyr_2764 0.62 +1.3
3,352,032 + Psyr_2764 0.62 +0.1
3,352,032 + Psyr_2764 0.62 +0.3
3,352,032 + Psyr_2764 0.62 -0.1
3,352,033 - Psyr_2764 0.62 -0.4
3,352,033 - Psyr_2764 0.62 +0.3
3,352,033 - Psyr_2764 0.62 -0.7
3,352,033 - Psyr_2764 0.62 +0.4
3,352,033 - Psyr_2764 0.62 +0.5
3,352,033 - Psyr_2764 0.62 -0.3
3,352,033 - Psyr_2764 0.62 +1.9
3,352,054 - Psyr_2764 0.64 -0.0
3,352,332 + Psyr_2764 0.86 -0.3
3,352,333 - Psyr_2764 0.86 +0.1
3,352,539 + Psyr_2765 0.18 -0.0
3,352,685 + Psyr_2765 0.86 -0.5
3,352,685 + Psyr_2765 0.86 +1.3
3,352,685 + Psyr_2765 0.86 +0.1
3,352,686 - Psyr_2765 0.87 -0.4
3,352,686 - Psyr_2765 0.87 -0.1
3,352,704 + +0.3
3,352,716 + -1.5
3,352,717 - +1.0
3,352,738 - +0.4
3,352,999 - Psyr_2766 0.52 -0.1
3,352,999 - Psyr_2766 0.52 -0.3
3,353,186 + Psyr_2766 0.87 -0.8
3,353,278 + -0.5
3,353,480 - Psyr_2767 0.43 -1.0
3,353,546 + Psyr_2767 0.55 +1.7
3,353,686 + Psyr_2767 0.82 +1.5
3,353,687 - Psyr_2767 0.82 +1.3

Or see this region's nucleotide sequence