Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2650

Experiment: KB with Mexicanolide 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Mexicanolide 10 mM
3,221,030	+		Psyr_2649	0.55	-0.7
3,221,030	+		Psyr_2649	0.55	+0.7
3,221,030	+		Psyr_2649	0.55	+0.7
3,221,030	+		Psyr_2649	0.55	+0.5
3,221,030	+		Psyr_2649	0.55	-2.2
3,221,030	+		Psyr_2649	0.55	+1.1
3,221,030	+		Psyr_2649	0.55	+1.3
3,221,030	+		Psyr_2649	0.55	+1.3
3,221,030	+		Psyr_2649	0.55	-0.0
3,221,030	+		Psyr_2649	0.55	+0.6
3,221,031	-		Psyr_2649	0.55	+0.3
3,221,031	-		Psyr_2649	0.55	-1.9
3,221,031	-		Psyr_2649	0.55	-0.0
3,221,031	-		Psyr_2649	0.55	-0.5
3,221,031	-		Psyr_2649	0.55	-3.6
3,221,031	-		Psyr_2649	0.55	-2.7
3,221,031	-		Psyr_2649	0.55	+0.9
3,221,031	-		Psyr_2649	0.55	+2.6
3,221,032	+		Psyr_2649	0.55	-0.1
3,221,032	+		Psyr_2649	0.55	+0.2
3,221,033	-		Psyr_2649	0.55	-1.3
3,221,033	-		Psyr_2649	0.55	-0.5
3,221,033	-		Psyr_2649	0.55	-0.0
3,221,033	-				+2.9
3,221,101	+		Psyr_2649	0.62	+0.4
3,221,137	-		Psyr_2649	0.65	-0.5
3,221,232	+		Psyr_2649	0.75	+0.2
3,221,361	+		Psyr_2649	0.88	+1.1
3,221,361	+		Psyr_2649	0.88	-0.9
3,221,361	+		Psyr_2649	0.88	+0.6
3,221,361	+		Psyr_2649	0.88	+0.4
3,221,361	+		Psyr_2649	0.88	-0.1
3,221,361	+		Psyr_2649	0.88	+0.9
3,221,361	+		Psyr_2649	0.88	-2.1
3,221,361	+		Psyr_2649	0.88	+0.7
3,221,361	+		Psyr_2649	0.88	+0.1
3,221,361	+		Psyr_2649	0.88	+1.6
3,221,361	+		Psyr_2649	0.88	-0.8
3,221,361	+		Psyr_2649	0.88	+0.7
3,221,361	+		Psyr_2649	0.88	-0.1
3,221,361	+		Psyr_2649	0.88	+0.4
3,221,361	+		Psyr_2649	0.88	-1.1
3,221,361	+		Psyr_2649	0.88	-0.7
3,221,361	+		Psyr_2649	0.88	+0.8
3,221,361	+		Psyr_2649	0.88	+1.0
3,221,361	+		Psyr_2649	0.88	+0.3
3,221,361	+		Psyr_2649	0.88	-0.8
3,221,362	-		Psyr_2649	0.88	-1.0
3,221,362	-		Psyr_2649	0.88	-2.7
3,221,362	-		Psyr_2649	0.88	+0.2
3,221,362	-		Psyr_2649	0.88	-0.7
3,221,362	-		Psyr_2649	0.88	+1.1
3,221,362	-		Psyr_2649	0.88	-1.7
3,221,362	-		Psyr_2649	0.88	-2.7
3,221,362	-		Psyr_2649	0.88	-0.8
3,221,362	-		Psyr_2649	0.88	+1.3
3,221,362	-		Psyr_2649	0.88	+1.0
3,221,362	-		Psyr_2649	0.88	-0.7
3,221,362	-		Psyr_2649	0.88	-1.3
3,221,362	-		Psyr_2649	0.88	-0.8
3,221,362	-		Psyr_2649	0.88	+0.3
3,221,378	-				-0.0
3,221,413	-				-0.7
3,221,420	+				+1.3
3,221,420	+				-2.0
3,221,421	-				+0.0
3,221,421	-				-2.6
3,221,422	+				-0.1
3,221,422	+				+1.6
3,221,422	+				-1.1
3,221,423	-				-0.7
3,221,438	+				-0.1
3,221,438	+				+0.5
3,221,439	-				-1.3
3,221,439	-				-0.9
3,221,601	+				+0.3
3,221,601	+				+1.3
3,221,601	+				+0.7
3,221,601	+				-0.4
3,221,601	+				-1.4
3,221,601	+				+1.6
3,221,601	+				-0.3
3,221,602	-				-0.9
3,221,602	-				-1.3
3,221,602	-				-1.1
3,221,602	-				-1.8
3,221,659	+				+0.7
3,221,660	-				-1.3
3,221,702	+				+0.0
3,221,719	+				+0.8
3,221,719	+				-1.0
3,221,720	-				-0.9
3,221,766	+				-1.8
3,221,766	+				+0.2
3,221,766	+				-0.5
3,221,767	-				-0.7
3,221,767	-				+0.4
3,221,767	-				-2.4
3,221,770	+				+1.9
3,221,770	+				+0.1
3,221,770	+				-1.3
3,221,770	+				-0.1
3,221,770	+				-1.5
3,221,770	+				+2.9
3,221,771	-				-0.5
3,221,771	-				-1.3
3,221,771	-				-0.5
3,221,771	-				-2.3
3,221,885	+				+0.6
3,221,885	+				+2.3
3,221,885	+				-1.3
3,221,885	+				-0.7
3,221,885	+				-1.3
3,221,886	-				+0.0
3,221,910	+				+0.6
3,221,910	+				+1.1
3,221,910	+				-0.7
3,221,910	+				-0.4
3,221,910	+				+0.3
3,221,911	-				+0.2
3,221,928	+				-1.3
3,221,928	+				-0.1
3,222,007	-		Psyr_2650	0.13	-0.1
3,222,038	+		Psyr_2650	0.20	-0.7
3,222,038	+		Psyr_2650	0.20	-0.2
3,222,039	-		Psyr_2650	0.20	-2.2
3,222,039	-		Psyr_2650	0.20	+0.3
3,222,041	+		Psyr_2650	0.21	-0.7
3,222,042	-		Psyr_2650	0.21	-0.4
3,222,042	-		Psyr_2650	0.21	-2.1
3,222,042	-		Psyr_2650	0.21	-2.3
3,222,141	+		Psyr_2650	0.42	-0.8
3,222,141	+		Psyr_2650	0.42	+0.0
3,222,142	-		Psyr_2650	0.42	-0.5
3,222,261	+		Psyr_2650	0.68	+0.0
3,222,285	+		Psyr_2650	0.73	+0.0
3,222,285	+		Psyr_2650	0.73	-0.4
3,222,321	+		Psyr_2650	0.80	-0.7
3,222,322	-		Psyr_2650	0.81	+1.3
3,222,322	-		Psyr_2650	0.81	-1.5
3,222,328	-		Psyr_2650	0.82	-1.0
3,222,328	-		Psyr_2650	0.82	+0.6
3,222,387	+				+2.8
3,222,388	-				+0.1
3,222,401	+				+0.2
3,222,401	+				-0.7
3,222,402	-				+0.1
3,222,405	+				-1.6
3,222,405	+				+0.3
3,222,405	+				+0.1
3,222,502	+				-1.3
3,222,502	+				-1.1
3,222,517	-				-2.4
3,222,577	-		Psyr_2651	0.16	-0.6
3,222,577	-		Psyr_2651	0.16	+0.2
3,222,625	+		Psyr_2651	0.21	-1.7
3,222,625	+		Psyr_2651	0.21	-1.2
3,222,626	-		Psyr_2651	0.21	+1.1
3,222,626	-		Psyr_2651	0.21	+1.0
3,222,626	-		Psyr_2651	0.21	+1.6
3,222,688	+				+0.3
3,222,688	+		Psyr_2651	0.28	-1.1
3,222,688	+		Psyr_2651	0.28	-1.5
3,222,688	+		Psyr_2651	0.28	-0.8
3,222,688	+		Psyr_2651	0.28	+1.3
3,222,688	+		Psyr_2651	0.28	-1.3
3,222,688	+		Psyr_2651	0.28	-1.0
3,222,689	-		Psyr_2651	0.28	-0.3
3,222,689	-		Psyr_2651	0.28	-0.4
3,222,689	-		Psyr_2651	0.28	-1.3
3,222,689	-		Psyr_2651	0.28	-0.3
3,222,689	-		Psyr_2651	0.28	+1.2
3,222,689	-		Psyr_2651	0.28	+3.9
3,222,689	-		Psyr_2651	0.28	-0.8
3,222,689	-		Psyr_2651	0.28	-0.3
3,222,689	-		Psyr_2651	0.28	-1.1
3,222,718	-		Psyr_2651	0.31	+0.0
3,222,727	+		Psyr_2651	0.32	-2.3
3,222,728	-		Psyr_2651	0.32	+0.5
3,222,728	-		Psyr_2651	0.32	-0.7
3,223,134	+		Psyr_2651	0.74	+0.7
3,223,135	-		Psyr_2651	0.74	-1.4
3,223,135	-		Psyr_2651	0.74	-0.1
3,223,135	-		Psyr_2651	0.74	-1.5
3,223,165	-		Psyr_2651	0.77	-0.7
3,223,165	-		Psyr_2651	0.77	-2.3
3,223,165	-		Psyr_2651	0.77	-0.7
3,223,220	+		Psyr_2651	0.83	-0.2
3,223,220	+		Psyr_2651	0.83	+0.7
3,223,220	+		Psyr_2651	0.83	-1.3
3,223,221	-		Psyr_2651	0.83	-0.1
3,223,221	-		Psyr_2651	0.83	-0.7
3,223,221	-				+1.3
3,223,221	-		Psyr_2651	0.83	-2.9
3,223,221	-		Psyr_2651	0.83	-1.4
3,223,221	-		Psyr_2651	0.83	+0.3
3,223,221	-		Psyr_2651	0.83	-0.7
3,223,226	-		Psyr_2651	0.84	-2.8
3,223,392	+				+0.1