Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2251

Experiment: KB with Mexicanolide 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2249 and Psyr_2250 are separated by 36 nucleotidesPsyr_2250 and Psyr_2251 are separated by 14 nucleotidesPsyr_2251 and Psyr_2252 overlap by 1 nucleotidesPsyr_2252 and Psyr_2253 overlap by 1 nucleotides Psyr_2249: Psyr_2249 - Binding-protein-dependent transport systems inner membrane component, at 2,615,476 to 2,616,264 _2249 Psyr_2250: Psyr_2250 - transcriptional regulator, GntR family, at 2,616,301 to 2,617,020 _2250 Psyr_2251: Psyr_2251 - Phosphonate metabolism PhnG, at 2,617,035 to 2,617,499 _2251 Psyr_2252: Psyr_2252 - phosphonate metabolism, at 2,617,499 to 2,618,095 _2252 Psyr_2253: Psyr_2253 - Phosphonate metabolism, at 2,618,095 to 2,619,174 _2253 Position (kb) 2617 2618Strain fitness (log2 ratio) -3 -2 -1 0 1at 2616.064 kb on + strand, within Psyr_2249at 2616.065 kb on - strand, within Psyr_2249at 2616.065 kb on - strand, within Psyr_2249at 2616.065 kb on - strand, within Psyr_2249at 2616.071 kb on + strand, within Psyr_2249at 2616.215 kb on + strandat 2616.331 kb on + strandat 2616.332 kb on - strandat 2617.299 kb on + strand, within Psyr_2251at 2617.300 kb on - strand, within Psyr_2251at 2617.300 kb on - strand, within Psyr_2251at 2618.098 kb on + strandat 2618.098 kb on + strandat 2618.098 kb on + strandat 2618.099 kb on - strandat 2618.099 kb on - strandat 2618.099 kb on - strandat 2618.099 kb on - strandat 2618.257 kb on + strand, within Psyr_2253at 2618.464 kb on + strand, within Psyr_2253at 2618.464 kb on + strand, within Psyr_2253at 2618.465 kb on - strand, within Psyr_2253

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mexicanolide 10 mM
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2,616,064 + Psyr_2249 0.75 -1.0
2,616,065 - Psyr_2249 0.75 +0.7
2,616,065 - Psyr_2249 0.75 +1.6
2,616,065 - Psyr_2249 0.75 -0.2
2,616,071 + Psyr_2249 0.75 -3.0
2,616,215 + -0.8
2,616,331 + -0.3
2,616,332 - -1.1
2,617,299 + Psyr_2251 0.57 +0.2
2,617,300 - Psyr_2251 0.57 -1.2
2,617,300 - Psyr_2251 0.57 -1.4
2,618,098 + -0.2
2,618,098 + +0.7
2,618,098 + -0.0
2,618,099 - -0.3
2,618,099 - +1.0
2,618,099 - +0.0
2,618,099 - -2.3
2,618,257 + Psyr_2253 0.15 -0.5
2,618,464 + Psyr_2253 0.34 -0.8
2,618,464 + Psyr_2253 0.34 +0.8
2,618,465 - Psyr_2253 0.34 -0.6

Or see this region's nucleotide sequence