Experiment: KB with Mexicanolide 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2249 and Psyr_2250 are separated by 36 nucleotides Psyr_2250 and Psyr_2251 are separated by 14 nucleotides Psyr_2251 and Psyr_2252 overlap by 1 nucleotides Psyr_2252 and Psyr_2253 overlap by 1 nucleotides
Psyr_2249: Psyr_2249 - Binding-protein-dependent transport systems inner membrane component, at 2,615,476 to 2,616,264
_2249
Psyr_2250: Psyr_2250 - transcriptional regulator, GntR family, at 2,616,301 to 2,617,020
_2250
Psyr_2251: Psyr_2251 - Phosphonate metabolism PhnG, at 2,617,035 to 2,617,499
_2251
Psyr_2252: Psyr_2252 - phosphonate metabolism, at 2,617,499 to 2,618,095
_2252
Psyr_2253: Psyr_2253 - Phosphonate metabolism, at 2,618,095 to 2,619,174
_2253
Position (kb)
2617
2618 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2616.064 kb on + strand, within Psyr_2249 at 2616.065 kb on - strand, within Psyr_2249 at 2616.065 kb on - strand, within Psyr_2249 at 2616.065 kb on - strand, within Psyr_2249 at 2616.071 kb on + strand, within Psyr_2249 at 2616.215 kb on + strand at 2616.331 kb on + strand at 2616.332 kb on - strand at 2617.299 kb on + strand, within Psyr_2251 at 2617.300 kb on - strand, within Psyr_2251 at 2617.300 kb on - strand, within Psyr_2251 at 2618.098 kb on + strand at 2618.098 kb on + strand at 2618.098 kb on + strand at 2618.099 kb on - strand at 2618.099 kb on - strand at 2618.099 kb on - strand at 2618.099 kb on - strand at 2618.257 kb on + strand, within Psyr_2253 at 2618.464 kb on + strand, within Psyr_2253 at 2618.464 kb on + strand, within Psyr_2253 at 2618.465 kb on - strand, within Psyr_2253
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mexicanolide 10 mM remove 2,616,064 + Psyr_2249 0.75 -1.0 2,616,065 - Psyr_2249 0.75 +0.7 2,616,065 - Psyr_2249 0.75 +1.6 2,616,065 - Psyr_2249 0.75 -0.2 2,616,071 + Psyr_2249 0.75 -3.0 2,616,215 + -0.8 2,616,331 + -0.3 2,616,332 - -1.1 2,617,299 + Psyr_2251 0.57 +0.2 2,617,300 - Psyr_2251 0.57 -1.2 2,617,300 - Psyr_2251 0.57 -1.4 2,618,098 + -0.2 2,618,098 + +0.7 2,618,098 + -0.0 2,618,099 - -0.3 2,618,099 - +1.0 2,618,099 - +0.0 2,618,099 - -2.3 2,618,257 + Psyr_2253 0.15 -0.5 2,618,464 + Psyr_2253 0.34 -0.8 2,618,464 + Psyr_2253 0.34 +0.8 2,618,465 - Psyr_2253 0.34 -0.6
Or see this region's nucleotide sequence