Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1903

Experiment: KB with Mexicanolide 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1901 and Psyr_1902 are separated by 42 nucleotidesPsyr_1902 and Psyr_1903 are separated by 41 nucleotidesPsyr_1903 and Psyr_1904 are separated by 102 nucleotides Psyr_1901: Psyr_1901 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase:Pyridine nucleotide-disulfide oxidoreductase dimerization region, at 2,176,378 to 2,177,811 _1901 Psyr_1902: Psyr_1902 - Glycerophosphoryl diester phosphodiesterase, at 2,177,854 to 2,178,576 _1902 Psyr_1903: Psyr_1903 - conserved hypothetical protein, at 2,178,618 to 2,179,205 _1903 Psyr_1904: Psyr_1904 - Protein of unknown function DUF214, at 2,179,308 to 2,180,558 _1904 Position (kb) 2178 2179 2180Strain fitness (log2 ratio) -2 -1 0 1at 2178.356 kb on + strand, within Psyr_1902at 2178.526 kb on - strandat 2178.563 kb on + strandat 2178.567 kb on + strandat 2178.568 kb on - strandat 2178.580 kb on + strandat 2178.596 kb on + strandat 2178.597 kb on - strandat 2178.696 kb on + strand, within Psyr_1903at 2178.740 kb on + strand, within Psyr_1903at 2178.742 kb on + strand, within Psyr_1903at 2178.743 kb on - strand, within Psyr_1903at 2178.743 kb on - strand, within Psyr_1903at 2179.171 kb on + strandat 2179.194 kb on + strandat 2179.194 kb on + strandat 2179.194 kb on + strandat 2179.194 kb on + strandat 2179.194 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mexicanolide 10 mM
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2,178,356 + Psyr_1902 0.69 -2.6
2,178,526 - -0.7
2,178,563 + -1.3
2,178,567 + -0.6
2,178,568 - -0.0
2,178,580 + +0.3
2,178,596 + -1.3
2,178,597 - +0.8
2,178,696 + Psyr_1903 0.13 +1.1
2,178,740 + Psyr_1903 0.21 -0.5
2,178,742 + Psyr_1903 0.21 -1.0
2,178,743 - Psyr_1903 0.21 -0.6
2,178,743 - Psyr_1903 0.21 -2.1
2,179,171 + -1.2
2,179,194 + +1.1
2,179,194 + -0.6
2,179,194 + -0.2
2,179,194 + +0.3
2,179,194 + -2.0

Or see this region's nucleotide sequence