Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0951

Experiment: KB with Mexicanolide 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0949 and Psyr_0950 are separated by 0 nucleotidesPsyr_0950 and Psyr_0951 overlap by 16 nucleotidesPsyr_0951 and Psyr_0952 overlap by 8 nucleotidesPsyr_0952 and Psyr_0953 are separated by 118 nucleotides Psyr_0949: Psyr_0949 - bacterial peptide chain release factor 1 (bRF-1), at 1,084,901 to 1,085,983 _0949 Psyr_0950: Psyr_0950 - [protein release factor]-glutamine N5-methyltransferase, at 1,085,984 to 1,086,817 _0950 Psyr_0951: Psyr_0951 - UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB, at 1,086,802 to 1,087,581 _0951 Psyr_0952: Psyr_0952 - glutamate racemase, at 1,087,574 to 1,088,389 _0952 Psyr_0953: Psyr_0953 - conserved hypothetical protein, at 1,088,508 to 1,089,026 _0953 Position (kb) 1086 1087 1088Strain fitness (log2 ratio) -3 -2 -1 0 1at 1085.948 kb on + strandat 1085.981 kb on + strandat 1085.981 kb on + strandat 1086.003 kb on + strandat 1086.838 kb on + strandat 1086.884 kb on + strand, within Psyr_0951at 1086.884 kb on + strand, within Psyr_0951at 1086.949 kb on + strand, within Psyr_0951at 1087.064 kb on + strand, within Psyr_0951at 1087.478 kb on + strand, within Psyr_0951at 1087.478 kb on + strand, within Psyr_0951at 1087.588 kb on + strandat 1087.588 kb on + strandat 1087.588 kb on + strandat 1087.588 kb on + strandat 1088.317 kb on - strandat 1088.424 kb on + strandat 1088.424 kb on + strandat 1088.425 kb on - strandat 1088.425 kb on - strandat 1088.425 kb on - strandat 1088.445 kb on + strandat 1088.445 kb on + strandat 1088.446 kb on - strandat 1088.446 kb on - strandat 1088.446 kb on - strandat 1088.446 kb on - strandat 1088.446 kb on - strandat 1088.447 kb on + strandat 1088.447 kb on + strandat 1088.447 kb on + strandat 1088.486 kb on + strandat 1088.491 kb on + strandat 1088.491 kb on + strandat 1088.491 kb on + strandat 1088.491 kb on + strandat 1088.492 kb on - strandat 1088.492 kb on - strandat 1088.492 kb on - strandat 1088.492 kb on - strandat 1088.495 kb on + strandat 1088.496 kb on - strandat 1088.496 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mexicanolide 10 mM
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1,085,948 + -0.4
1,085,981 + -0.4
1,085,981 + -0.5
1,086,003 + -0.8
1,086,838 + -0.4
1,086,884 + Psyr_0951 0.11 -1.7
1,086,884 + Psyr_0951 0.11 -2.4
1,086,949 + Psyr_0951 0.19 -2.4
1,087,064 + Psyr_0951 0.34 -1.7
1,087,478 + Psyr_0951 0.87 -0.7
1,087,478 + Psyr_0951 0.87 -2.3
1,087,588 + -0.4
1,087,588 + -0.9
1,087,588 + -0.5
1,087,588 + -0.2
1,088,317 - -2.9
1,088,424 + -0.1
1,088,424 + +0.3
1,088,425 - -1.1
1,088,425 - -1.3
1,088,425 - -0.2
1,088,445 + -1.0
1,088,445 + +0.2
1,088,446 - +0.5
1,088,446 - -0.3
1,088,446 - +0.3
1,088,446 - -0.2
1,088,446 - -1.2
1,088,447 + +0.1
1,088,447 + -0.6
1,088,447 + -0.7
1,088,486 + +0.6
1,088,491 + -0.3
1,088,491 + -1.0
1,088,491 + -1.6
1,088,491 + -1.6
1,088,492 - +0.0
1,088,492 - +0.6
1,088,492 - -0.9
1,088,492 - -0.0
1,088,495 + +0.0
1,088,496 - +0.1
1,088,496 - +0.3

Or see this region's nucleotide sequence