Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0919

Experiment: KB with Mexicanolide 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Mexicanolide 10 mM
1,043,050	+		Psyr_0918	0.19	-3.2
1,043,089	+		Psyr_0918	0.22	-1.8
1,043,113	+		Psyr_0918	0.24	-2.5
1,043,113	+		Psyr_0918	0.24	-1.0
1,043,144	+		Psyr_0918	0.26	-3.3
1,043,144	+		Psyr_0918	0.26	-1.6
1,043,145	-		Psyr_0918	0.26	-1.8
1,043,145	-		Psyr_0918	0.26	-2.6
1,043,145	-		Psyr_0918	0.26	-3.4
1,043,232	-		Psyr_0918	0.34	-1.7
1,043,232	-		Psyr_0918	0.34	-1.4
1,043,256	-		Psyr_0918	0.36	-2.4
1,043,256	-		Psyr_0918	0.36	-1.6
1,043,256	-		Psyr_0918	0.36	+1.2
1,043,256	-		Psyr_0918	0.36	-3.4
1,043,256	-		Psyr_0918	0.36	-2.7
1,043,256	-		Psyr_0918	0.36	-3.6
1,043,256	-		Psyr_0918	0.36	-3.2
1,043,256	-		Psyr_0918	0.36	-0.6
1,043,256	-		Psyr_0918	0.36	-0.8
1,043,266	+		Psyr_0918	0.36	-4.1
1,043,316	+		Psyr_0918	0.40	-1.2
1,043,316	+		Psyr_0918	0.40	-2.6
1,043,316	+		Psyr_0918	0.40	-2.6
1,043,316	+		Psyr_0918	0.40	-2.4
1,043,316	+		Psyr_0918	0.40	-3.5
1,043,316	+		Psyr_0918	0.40	-1.4
1,043,316	+		Psyr_0918	0.40	-1.8
1,043,317	-		Psyr_0918	0.41	-3.4
1,043,317	-		Psyr_0918	0.41	-2.5
1,043,317	-		Psyr_0918	0.41	-2.9
1,043,320	+		Psyr_0918	0.41	-0.9
1,043,320	+		Psyr_0918	0.41	-1.6
1,043,321	-		Psyr_0918	0.41	-3.8
1,043,350	+		Psyr_0918	0.43	-1.4
1,043,354	+		Psyr_0918	0.44	-2.2
1,043,355	-		Psyr_0918	0.44	-2.3
1,043,365	+		Psyr_0918	0.44	+0.6
1,043,366	-		Psyr_0918	0.45	-3.2
1,043,366	-		Psyr_0918	0.45	-4.3
1,043,366	-		Psyr_0918	0.45	-0.8
1,043,380	+		Psyr_0918	0.46	-0.5
1,043,380	+		Psyr_0918	0.46	-1.2
1,043,380	+		Psyr_0918	0.46	-0.4
1,043,380	+		Psyr_0918	0.46	-1.8
1,043,380	+		Psyr_0918	0.46	-0.6
1,043,381	-		Psyr_0918	0.46	-2.2
1,043,381	-		Psyr_0918	0.46	-1.3
1,043,382	+		Psyr_0918	0.46	-0.4
1,043,382	+		Psyr_0918	0.46	-3.5
1,043,382	+		Psyr_0918	0.46	-1.0
1,043,382	+		Psyr_0918	0.46	+2.2
1,043,382	+		Psyr_0918	0.46	-0.8
1,043,383	-		Psyr_0918	0.46	+0.2
1,043,383	-		Psyr_0918	0.46	-1.2
1,043,383	-		Psyr_0918	0.46	-3.2
1,043,383	-		Psyr_0918	0.46	-0.6
1,043,383	-		Psyr_0918	0.46	-0.4
1,043,383	-		Psyr_0918	0.46	+0.2
1,043,383	-		Psyr_0918	0.46	-2.3
1,043,416	+		Psyr_0918	0.49	-1.7
1,043,467	-		Psyr_0918	0.53	-2.0
1,043,482	+		Psyr_0918	0.54	-3.7
1,043,483	-		Psyr_0918	0.54	-2.3
1,043,490	+		Psyr_0918	0.55	-3.2
1,043,527	+		Psyr_0918	0.58	-2.5
1,043,527	+		Psyr_0918	0.58	-1.0
1,043,662	+		Psyr_0918	0.69	-0.6
1,043,669	+		Psyr_0918	0.69	-2.0
1,043,669	+		Psyr_0918	0.69	-2.8
1,043,669	+		Psyr_0918	0.69	-1.2
1,043,669	+		Psyr_0918	0.69	-1.4
1,043,669	+		Psyr_0918	0.69	-0.8
1,043,670	-		Psyr_0918	0.70	-0.2
1,043,670	-		Psyr_0918	0.70	-0.1
1,043,670	-		Psyr_0918	0.70	-2.3
1,043,670	-		Psyr_0918	0.70	-0.8
1,043,670	-		Psyr_0918	0.70	-2.5
1,043,670	-		Psyr_0918	0.70	-1.4
1,043,670	-		Psyr_0918	0.70	-2.3
1,043,670	-		Psyr_0918	0.70	+0.4
1,043,670	-		Psyr_0918	0.70	-1.4
1,043,670	-		Psyr_0918	0.70	-2.4
1,043,719	+		Psyr_0918	0.74	-3.5
1,043,743	-		Psyr_0918	0.76	-1.6
1,043,743	-		Psyr_0918	0.76	-0.9
1,043,747	+		Psyr_0918	0.76	-2.4
1,043,747	+		Psyr_0918	0.76	-1.6
1,043,846	+		Psyr_0918	0.84	+0.2
1,043,847	-		Psyr_0918	0.84	-3.2
1,043,847	-		Psyr_0918	0.84	-1.5
1,043,867	-		Psyr_0918	0.86	-0.2
1,043,937	-				-4.0
1,043,937	-				-1.8
1,043,937	-				+0.2
1,043,937	-				-1.4
1,043,937	-				-1.8
1,043,937	-				-2.6
1,043,947	-				-2.5
1,043,947	-				-2.5
1,043,947	-				-2.4
1,043,970	+				-1.6
1,043,970	+				-2.3
1,043,970	+				-0.3
1,043,971	-				-2.5
1,043,971	-				-2.5
1,043,971	-				+0.8
1,043,977	+				+1.0
1,043,978	-				-1.8
1,044,034	+				+1.5
1,044,034	+				-1.0
1,044,034	+				-0.2
1,044,035	-				-1.8
1,044,035	-				-1.2
1,044,035	-				+0.3
1,044,035	-				-1.2
1,044,035	-				-1.1
1,044,035	-				-0.0
1,044,035	-				-0.4
1,044,052	+				-0.4
1,044,052	+				-0.6
1,044,053	-				+0.4
1,044,115	+				-1.2
1,044,116	-				-0.7
1,044,116	-				-1.1
1,044,116	-				+0.3
1,044,116	-				-0.2
1,044,116	-				-0.2
1,044,116	-				-0.4
1,044,137	+				+1.2
1,044,137	+				-1.8
1,044,138	-				-0.9
1,044,234	+		Psyr_0919	0.10	-0.8
1,044,252	+		Psyr_0919	0.11	-0.4
1,044,253	-		Psyr_0919	0.11	-0.4
1,044,345	+		Psyr_0919	0.16	+0.3
1,044,346	-		Psyr_0919	0.16	-2.5
1,044,390	+		Psyr_0919	0.18	+0.5
1,044,390	+		Psyr_0919	0.18	-1.0
1,044,390	+		Psyr_0919	0.18	-0.9
1,044,419	+		Psyr_0919	0.20	-2.6
1,044,420	-		Psyr_0919	0.20	-0.9
1,044,422	+		Psyr_0919	0.20	+0.1
1,044,422	+		Psyr_0919	0.20	-0.7
1,044,423	-		Psyr_0919	0.20	-0.8
1,044,441	+		Psyr_0919	0.21	-0.9
1,044,493	+		Psyr_0919	0.23	-0.2
1,044,493	+		Psyr_0919	0.23	-0.9
1,044,494	-		Psyr_0919	0.24	-0.8
1,044,510	+		Psyr_0919	0.24	+0.7
1,044,510	+		Psyr_0919	0.24	-0.6
1,044,511	-		Psyr_0919	0.24	-1.5
1,044,511	-		Psyr_0919	0.24	-2.5
1,044,511	-		Psyr_0919	0.24	-2.7
1,044,511	-		Psyr_0919	0.24	-1.8
1,044,554	-		Psyr_0919	0.27	-2.1
1,044,554	-		Psyr_0919	0.27	-1.6
1,044,554	-		Psyr_0919	0.27	-2.7
1,044,708	-		Psyr_0919	0.35	-1.0
1,044,708	-		Psyr_0919	0.35	-0.1
1,044,708	-		Psyr_0919	0.35	-2.5
1,044,733	+		Psyr_0919	0.36	-0.3
1,044,734	-		Psyr_0919	0.36	-0.4
1,044,734	-		Psyr_0919	0.36	-0.6
1,044,807	+		Psyr_0919	0.40	-2.4
1,044,807	+		Psyr_0919	0.40	-1.5
1,044,808	-		Psyr_0919	0.40	-0.5
1,044,808	-		Psyr_0919	0.40	-1.9
1,044,808	-		Psyr_0919	0.40	-0.2
1,044,808	-		Psyr_0919	0.40	-1.6
1,044,808	-		Psyr_0919	0.40	-3.1
1,045,071	+		Psyr_0919	0.53	+0.5
1,045,179	+		Psyr_0919	0.59	-1.8
1,045,179	+		Psyr_0919	0.59	-2.7
1,045,203	-		Psyr_0919	0.60	+0.2
1,045,203	-		Psyr_0919	0.60	-1.0
1,045,248	+		Psyr_0919	0.62	-2.7
1,045,284	+		Psyr_0919	0.64	-1.7
1,045,285	-		Psyr_0919	0.64	-2.2
1,045,380	+		Psyr_0919	0.69	-0.2
1,045,381	-		Psyr_0919	0.69	-0.9
1,045,566	+		Psyr_0919	0.79	-0.3
1,045,580	-		Psyr_0919	0.79	-1.7
1,045,608	+		Psyr_0919	0.81	+0.3
1,045,608	+		Psyr_0919	0.81	-0.1
1,045,608	+		Psyr_0919	0.81	-0.6
1,045,609	-		Psyr_0919	0.81	+0.3
1,045,609	-		Psyr_0919	0.81	-0.6
1,045,609	-		Psyr_0919	0.81	+0.7
1,045,611	+		Psyr_0919	0.81	+0.2
1,045,611	+		Psyr_0919	0.81	+0.2
1,045,611	+		Psyr_0919	0.81	+1.6
1,045,611	+		Psyr_0919	0.81	-3.4
1,045,611	+		Psyr_0919	0.81	+1.6
1,045,611	+		Psyr_0919	0.81	-0.6
1,045,612	-		Psyr_0919	0.81	-1.6
1,045,612	-		Psyr_0919	0.81	-2.0
1,045,612	-		Psyr_0919	0.81	-0.1
1,045,612	-		Psyr_0919	0.81	-1.8
1,045,625	+		Psyr_0919	0.82	+1.5
1,045,676	+		Psyr_0919	0.84	-0.6
1,045,676	+		Psyr_0919	0.84	-1.3
1,045,676	+		Psyr_0919	0.84	-1.0
1,045,677	-		Psyr_0919	0.84	-1.2
1,045,677	-		Psyr_0919	0.84	-0.1
1,045,703	+		Psyr_0919	0.86	-0.5
1,045,703	+		Psyr_0919	0.86	+1.2
1,045,704	-		Psyr_0919	0.86	+0.4
1,045,704	-		Psyr_0919	0.86	-0.3
1,045,704	-		Psyr_0919	0.86	-0.3
1,045,704	-		Psyr_0919	0.86	-1.4
1,045,727	+		Psyr_0919	0.87	-2.5
1,045,743	+		Psyr_0919	0.88	-0.9
1,045,755	-		Psyr_0919	0.89	-1.1
1,045,773	+		Psyr_0919	0.89	-0.6
1,045,773	+		Psyr_0919	0.89	-0.5
1,045,774	-		Psyr_0919	0.89	-1.4
1,045,803	+				+0.9
1,045,804	-				-2.5
1,045,836	+				-0.3
1,045,836	+				+2.4
1,045,836	+				-0.8
1,045,837	-				+0.6
1,045,837	-				-0.1
1,045,933	+				-1.1
1,045,933	+				-1.9
1,045,933	+				-0.3
1,045,934	-				-0.9
1,045,982	+				-1.4
1,045,983	-				-1.8
1,045,996	+				-1.5
1,045,996	+				+0.2
1,045,996	+				-1.4
1,045,997	-				-4.2
1,045,997	-				-0.4
1,046,092	+				+0.8
1,046,092	+				+0.0
1,046,092	+				-1.1
1,046,092	+				+0.0
1,046,093	-				-2.4
1,046,093	-				-0.6
1,046,093	-				-1.4
1,046,137	+				-0.2
1,046,137	+				-1.6
1,046,137	+				-1.3
1,046,138	-				-0.2
1,046,159	+				-2.0
1,046,159	+				-1.0
1,046,176	+				-2.0
1,046,176	+				-1.6
1,046,176	+				+0.1
1,046,176	+				-0.9
1,046,176	+				-0.8
1,046,177	-				-2.2
1,046,180	+				-2.0
1,046,180	+				-1.5
1,046,180	+				-2.4
1,046,180	+				-1.1
1,046,180	+				+0.8
1,046,180	+				+0.2
1,046,180	+				-0.6
1,046,180	+				+0.2
1,046,180	+				-1.2
1,046,180	+				-1.8
1,046,180	+				+2.2
1,046,180	+				-2.2
1,046,180	+				-2.5
1,046,180	+				-0.0
1,046,180	+				+0.3
1,046,180	+				+0.5
1,046,180	+				+0.2
1,046,180	+				-0.4
1,046,180	+				+0.2
1,046,180	+				-1.6
1,046,180	+				-0.4
1,046,180	+				-0.9
1,046,181	-				-1.8
1,046,181	-				-0.2
1,046,181	-				-1.5
1,046,181	-				-2.5
1,046,181	-				-1.9
1,046,181	-				-1.8
1,046,181	-				-1.6
1,046,181	-				+0.4
1,046,181	-				-2.6
1,046,181	-				-0.8
1,046,181	-				-1.0
1,046,182	+				+1.2
1,046,182	+				-0.6
1,046,182	+				-0.2
1,046,182	+				-0.5
1,046,182	+				+1.3
1,046,182	+				-1.8
1,046,182	+				-0.7
1,046,182	+				-0.7
1,046,182	+				-0.1
1,046,183	-				-2.8
1,046,183	-				-0.8
1,046,183	-				-1.4
1,046,183	-				-0.3
1,046,183	-				-2.8
1,046,183	-				-0.5
1,046,183	-				-2.2
1,046,183	-				-3.2
1,046,183	-				+0.5
1,046,183	-				-1.1
1,046,183	-				-2.3
1,046,183	-				-1.1
1,046,183	-				-2.3
1,046,183	-				-0.6
1,046,183	-				-1.6
1,046,365	+		Psyr_0920	0.16	+0.7
1,046,366	-		Psyr_0920	0.16	-1.4
1,046,366	-		Psyr_0920	0.16	-2.1
1,046,373	+		Psyr_0920	0.16	+0.2
1,046,373	+		Psyr_0920	0.16	-0.5
1,046,374	-		Psyr_0920	0.16	-0.6
1,046,374	-		Psyr_0920	0.16	-0.5
1,046,406	+		Psyr_0920	0.17	-3.3
1,046,406	+		Psyr_0920	0.17	-1.1
1,046,406	+		Psyr_0920	0.17	-1.5
1,046,406	+		Psyr_0920	0.17	-0.5
1,046,407	-		Psyr_0920	0.17	-1.3
1,046,407	-		Psyr_0920	0.17	-1.9
1,046,407	-		Psyr_0920	0.17	+0.7
1,046,407	-		Psyr_0920	0.17	+1.2
1,046,414	+		Psyr_0920	0.18	-0.4
1,046,434	-		Psyr_0920	0.18	-0.9
1,046,434	-		Psyr_0920	0.18	-0.8
1,046,434	-		Psyr_0920	0.18	-1.4
1,046,436	+		Psyr_0920	0.18	-2.0
1,046,444	+		Psyr_0920	0.19	-0.0
1,046,449	+		Psyr_0920	0.19	+0.2
1,046,450	-		Psyr_0920	0.19	-1.7
1,046,472	-		Psyr_0920	0.20	-0.1
1,046,521	+		Psyr_0920	0.22	-1.9
1,046,521	+		Psyr_0920	0.22	-0.0
1,046,522	-		Psyr_0920	0.22	-1.7
1,046,550	-		Psyr_0920	0.23	-1.1
1,046,550	-		Psyr_0920	0.23	-2.9
1,046,576	+		Psyr_0920	0.24	+1.4
1,046,615	-		Psyr_0920	0.26	-2.4
1,046,615	-		Psyr_0920	0.26	-0.4
1,046,652	+		Psyr_0920	0.27	-2.3
1,046,706	+		Psyr_0920	0.29	+1.0
1,046,706	+		Psyr_0920	0.29	-0.4
1,046,706	+		Psyr_0920	0.29	-0.3
1,046,706	+		Psyr_0920	0.29	+1.3
1,046,707	-		Psyr_0920	0.29	-2.0
1,046,707	-		Psyr_0920	0.29	+0.2
1,046,707	-		Psyr_0920	0.29	-0.3
1,046,708	+		Psyr_0920	0.29	+1.3
1,046,708	+		Psyr_0920	0.29	-0.4
1,046,708	+		Psyr_0920	0.29	+0.8
1,046,708	+		Psyr_0920	0.29	+0.1
1,046,708	+		Psyr_0920	0.29	+2.2
1,046,708	+		Psyr_0920	0.29	-2.2
1,046,729	+		Psyr_0920	0.30	-1.3
1,046,749	+		Psyr_0920	0.31	-0.4
1,046,844	+		Psyr_0920	0.35	-1.0
1,046,874	+		Psyr_0920	0.36	-1.6
1,046,874	+		Psyr_0920	0.36	-1.6
1,046,874	+		Psyr_0920	0.36	+0.1
1,046,875	-		Psyr_0920	0.36	-2.7
1,046,875	-		Psyr_0920	0.36	-1.2
1,046,875	-		Psyr_0920	0.36	-2.1
1,046,890	+		Psyr_0920	0.37	-1.0
1,046,890	+		Psyr_0920	0.37	-0.7
1,046,890	+		Psyr_0920	0.37	-2.1
1,046,890	+		Psyr_0920	0.37	+0.4
1,046,890	+		Psyr_0920	0.37	-1.2
1,046,890	+		Psyr_0920	0.37	-3.2
1,046,890	+		Psyr_0920	0.37	+0.8
1,046,890	+		Psyr_0920	0.37	+3.6
1,046,890	+		Psyr_0920	0.37	-0.8
1,046,891	-		Psyr_0920	0.37	-2.0
1,046,891	-		Psyr_0920	0.37	-1.2
1,046,891	-		Psyr_0920	0.37	+0.2
1,046,891	-		Psyr_0920	0.37	-1.3
1,046,891	-		Psyr_0920	0.37	-1.2
1,046,891	-		Psyr_0920	0.37	+0.2
1,046,891	-		Psyr_0920	0.37	-1.4
1,046,891	-		Psyr_0920	0.37	+0.5
1,046,891	-		Psyr_0920	0.37	-0.9
1,046,891	-		Psyr_0920	0.37	-0.4
1,046,891	-		Psyr_0920	0.37	-0.8
1,046,972	+		Psyr_0920	0.40	-0.8
1,046,972	+		Psyr_0920	0.40	-0.0
1,046,972	+		Psyr_0920	0.40	+1.8