Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0784

Experiment: KB with Mexicanolide 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0782 and Psyr_0783 overlap by 4 nucleotidesPsyr_0783 and Psyr_0784 are separated by 9 nucleotidesPsyr_0784 and Psyr_0785 are separated by 36 nucleotides Psyr_0782: Psyr_0782 - CheD, at 888,963 to 889,496 _0782 Psyr_0783: Psyr_0783 - MCP methyltransferase, CheR-type, at 889,493 to 890,302 _0783 Psyr_0784: Psyr_0784 - CheW-like protein, at 890,312 to 890,851 _0784 Psyr_0785: Psyr_0785 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 890,888 to 892,543 _0785 Position (kb) 890 891Strain fitness (log2 ratio) -2 -1 0 1 2at 889.327 kb on - strand, within Psyr_0782at 889.339 kb on - strand, within Psyr_0782at 889.389 kb on - strand, within Psyr_0782at 889.467 kb on + strandat 889.467 kb on + strandat 889.468 kb on - strandat 889.468 kb on - strandat 889.468 kb on - strandat 889.578 kb on + strand, within Psyr_0783at 889.578 kb on + strand, within Psyr_0783at 889.579 kb on - strand, within Psyr_0783at 889.579 kb on - strand, within Psyr_0783at 889.579 kb on - strand, within Psyr_0783at 889.579 kb on - strand, within Psyr_0783at 889.644 kb on + strand, within Psyr_0783at 889.644 kb on + strand, within Psyr_0783at 889.645 kb on - strand, within Psyr_0783at 889.794 kb on + strand, within Psyr_0783at 889.794 kb on + strand, within Psyr_0783at 889.794 kb on + strand, within Psyr_0783at 889.794 kb on + strand, within Psyr_0783at 889.794 kb on + strand, within Psyr_0783at 889.795 kb on - strand, within Psyr_0783at 889.795 kb on - strand, within Psyr_0783at 889.795 kb on - strand, within Psyr_0783at 889.948 kb on - strand, within Psyr_0783at 890.064 kb on + strand, within Psyr_0783at 890.065 kb on - strand, within Psyr_0783at 890.065 kb on - strand, within Psyr_0783at 890.065 kb on - strand, within Psyr_0783at 890.142 kb on + strand, within Psyr_0783at 890.143 kb on - strand, within Psyr_0783at 890.151 kb on + strand, within Psyr_0783at 890.151 kb on + strand, within Psyr_0783at 890.151 kb on + strand, within Psyr_0783at 890.151 kb on + strand, within Psyr_0783at 890.152 kb on - strand, within Psyr_0783at 890.152 kb on - strand, within Psyr_0783at 890.166 kb on + strand, within Psyr_0783at 890.166 kb on + strand, within Psyr_0783at 890.167 kb on - strand, within Psyr_0783at 890.244 kb on + strandat 890.244 kb on + strandat 890.244 kb on + strandat 890.245 kb on - strandat 890.245 kb on - strandat 890.294 kb on - strandat 890.294 kb on - strandat 890.724 kb on + strand, within Psyr_0784at 890.724 kb on + strand, within Psyr_0784at 891.106 kb on + strand, within Psyr_0785at 891.739 kb on + strand, within Psyr_0785at 891.740 kb on - strand, within Psyr_0785

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mexicanolide 10 mM
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889,327 - Psyr_0782 0.68 -0.1
889,339 - Psyr_0782 0.70 -2.0
889,389 - Psyr_0782 0.80 -0.2
889,467 + +0.4
889,467 + -0.4
889,468 - -0.3
889,468 - -0.4
889,468 - -0.2
889,578 + Psyr_0783 0.10 -0.8
889,578 + Psyr_0783 0.10 -0.4
889,579 - Psyr_0783 0.11 -0.4
889,579 - Psyr_0783 0.11 +0.1
889,579 - Psyr_0783 0.11 -0.9
889,579 - Psyr_0783 0.11 -0.1
889,644 + Psyr_0783 0.19 -0.5
889,644 + Psyr_0783 0.19 +0.0
889,645 - Psyr_0783 0.19 +0.0
889,794 + Psyr_0783 0.37 +0.2
889,794 + Psyr_0783 0.37 -0.4
889,794 + Psyr_0783 0.37 -0.6
889,794 + Psyr_0783 0.37 -0.6
889,794 + Psyr_0783 0.37 +0.8
889,795 - Psyr_0783 0.37 -0.7
889,795 - Psyr_0783 0.37 -0.5
889,795 - Psyr_0783 0.37 -0.9
889,948 - Psyr_0783 0.56 -1.1
890,064 + Psyr_0783 0.70 +0.9
890,065 - Psyr_0783 0.71 -0.3
890,065 - Psyr_0783 0.71 +0.3
890,065 - Psyr_0783 0.71 +0.1
890,142 + Psyr_0783 0.80 +0.4
890,143 - Psyr_0783 0.80 +0.4
890,151 + Psyr_0783 0.81 -0.8
890,151 + Psyr_0783 0.81 +0.6
890,151 + Psyr_0783 0.81 -1.8
890,151 + Psyr_0783 0.81 -0.3
890,152 - Psyr_0783 0.81 -0.3
890,152 - Psyr_0783 0.81 +1.9
890,166 + Psyr_0783 0.83 -0.3
890,166 + Psyr_0783 0.83 +0.6
890,167 - Psyr_0783 0.83 +0.8
890,244 + -0.1
890,244 + +0.8
890,244 + -0.1
890,245 - -0.1
890,245 - +0.6
890,294 - +1.4
890,294 - -0.7
890,724 + Psyr_0784 0.76 -1.3
890,724 + Psyr_0784 0.76 -0.3
891,106 + Psyr_0785 0.13 +1.5
891,739 + Psyr_0785 0.51 +0.8
891,740 - Psyr_0785 0.51 -0.4

Or see this region's nucleotide sequence