Experiment: KB with Mexicanolide 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0734 and Psyr_0735 are separated by 363 nucleotides Psyr_0735 and Psyr_0736 overlap by 14 nucleotides Psyr_0736 and Psyr_0737 are separated by 213 nucleotides
Psyr_0734: Psyr_0734 - Protein of unknown function DUF159, at 839,680 to 840,123
_0734
Psyr_0735: Psyr_0735 - Peptidase S24, S26A and S26B, at 840,487 to 840,921
_0735
Psyr_0736: Psyr_0736 - umuC protein, at 840,908 to 841,153
_0736
Psyr_0737: Psyr_0737 - putative transmembrane protein, at 841,367 to 841,780
_0737
Position (kb)
840
841
842 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 839.992 kb on - strand, within Psyr_0734 at 839.997 kb on + strand, within Psyr_0734 at 839.998 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.252 kb on + strand at 840.252 kb on + strand at 840.252 kb on + strand at 840.252 kb on + strand at 840.253 kb on - strand at 840.266 kb on + strand at 840.267 kb on - strand at 840.267 kb on - strand at 840.274 kb on + strand at 840.284 kb on - strand at 840.333 kb on - strand at 840.351 kb on - strand at 840.351 kb on - strand at 840.452 kb on + strand at 840.452 kb on + strand at 840.452 kb on + strand at 840.452 kb on + strand at 840.452 kb on + strand at 840.454 kb on + strand at 840.829 kb on - strand, within Psyr_0735 at 840.829 kb on - strand, within Psyr_0735 at 840.829 kb on - strand, within Psyr_0735 at 840.829 kb on - strand, within Psyr_0735 at 840.892 kb on + strand at 840.938 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 841.143 kb on - strand at 841.143 kb on - strand at 841.152 kb on - strand at 841.152 kb on - strand at 841.152 kb on - strand at 841.154 kb on + strand at 841.154 kb on + strand at 841.154 kb on + strand at 841.154 kb on + strand at 841.154 kb on + strand at 841.155 kb on - strand at 841.159 kb on + strand at 841.160 kb on - strand at 841.160 kb on - strand at 841.223 kb on + strand at 841.223 kb on + strand at 841.224 kb on - strand at 841.340 kb on - strand at 841.354 kb on + strand at 841.357 kb on + strand at 841.446 kb on - strand, within Psyr_0737 at 841.446 kb on - strand, within Psyr_0737 at 841.487 kb on - strand, within Psyr_0737 at 841.487 kb on - strand, within Psyr_0737 at 841.497 kb on + strand, within Psyr_0737 at 841.519 kb on + strand, within Psyr_0737 at 841.520 kb on - strand, within Psyr_0737 at 841.545 kb on - strand, within Psyr_0737 at 841.545 kb on - strand, within Psyr_0737 at 841.571 kb on - strand, within Psyr_0737 at 841.571 kb on - strand, within Psyr_0737 at 841.571 kb on - strand, within Psyr_0737 at 841.571 kb on - strand, within Psyr_0737 at 841.574 kb on + strand, within Psyr_0737 at 841.574 kb on + strand, within Psyr_0737 at 841.575 kb on - strand, within Psyr_0737 at 841.575 kb on - strand, within Psyr_0737 at 841.640 kb on - strand, within Psyr_0737 at 841.641 kb on + strand, within Psyr_0737 at 841.641 kb on + strand, within Psyr_0737 at 841.641 kb on + strand, within Psyr_0737 at 841.642 kb on - strand, within Psyr_0737 at 841.716 kb on + strand, within Psyr_0737 at 841.784 kb on - strand at 841.880 kb on + strand at 841.881 kb on - strand at 841.885 kb on - strand at 841.895 kb on - strand at 841.965 kb on - strand at 842.014 kb on + strand at 842.024 kb on + strand at 842.024 kb on + strand at 842.144 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mexicanolide 10 mM remove 839,992 - Psyr_0734 0.70 -1.3 839,997 + Psyr_0734 0.71 -0.0 839,998 - Psyr_0734 0.72 +0.7 840,012 - Psyr_0734 0.75 -1.4 840,012 - Psyr_0734 0.75 +0.1 840,012 - Psyr_0734 0.75 -0.6 840,012 - Psyr_0734 0.75 +0.1 840,012 - Psyr_0734 0.75 -0.6 840,252 + -0.2 840,252 + -0.1 840,252 + +0.3 840,252 + +0.0 840,253 - +0.7 840,266 + +0.5 840,267 - +0.2 840,267 - +0.4 840,274 + +0.7 840,284 - +1.2 840,333 - +0.4 840,351 - -0.6 840,351 - +0.2 840,452 + -1.0 840,452 + -1.4 840,452 + -0.4 840,452 + -0.3 840,452 + -1.1 840,454 + +0.3 840,829 - Psyr_0735 0.79 +2.0 840,829 - Psyr_0735 0.79 -0.2 840,829 - Psyr_0735 0.79 -0.1 840,829 - Psyr_0735 0.79 +0.2 840,892 + -1.1 840,938 - Psyr_0736 0.12 -0.3 840,957 - Psyr_0736 0.20 -0.8 840,957 - Psyr_0736 0.20 -0.5 840,957 - Psyr_0736 0.20 +0.2 840,957 - Psyr_0736 0.20 -0.4 840,957 - Psyr_0736 0.20 -0.8 840,957 - Psyr_0736 0.20 -0.6 841,143 - +0.8 841,143 - +0.3 841,152 - -0.2 841,152 - -1.4 841,152 - +0.3 841,154 + -0.3 841,154 + -0.3 841,154 + -1.4 841,154 + +0.2 841,154 + -0.7 841,155 - +0.3 841,159 + +0.3 841,160 - +0.0 841,160 - +1.4 841,223 + +0.6 841,223 + +0.3 841,224 - +0.6 841,340 - -3.1 841,354 + -1.2 841,357 + -0.7 841,446 - Psyr_0737 0.19 +0.8 841,446 - Psyr_0737 0.19 +1.6 841,487 - Psyr_0737 0.29 +0.4 841,487 - Psyr_0737 0.29 +0.3 841,497 + Psyr_0737 0.31 -0.9 841,519 + Psyr_0737 0.37 -1.4 841,520 - Psyr_0737 0.37 +0.3 841,545 - Psyr_0737 0.43 -0.1 841,545 - Psyr_0737 0.43 -0.4 841,571 - Psyr_0737 0.49 -0.1 841,571 - Psyr_0737 0.49 -0.4 841,571 - Psyr_0737 0.49 -0.6 841,571 - Psyr_0737 0.49 -0.8 841,574 + Psyr_0737 0.50 +0.8 841,574 + Psyr_0737 0.50 +0.2 841,575 - Psyr_0737 0.50 -0.5 841,575 - Psyr_0737 0.50 +2.3 841,640 - Psyr_0737 0.66 -0.5 841,641 + Psyr_0737 0.66 -2.4 841,641 + Psyr_0737 0.66 -0.4 841,641 + Psyr_0737 0.66 -1.7 841,642 - Psyr_0737 0.66 +1.4 841,716 + Psyr_0737 0.84 -0.2 841,784 - -0.6 841,880 + -1.3 841,881 - -0.1 841,885 - +0.4 841,895 - +0.1 841,965 - +1.2 842,014 + -0.6 842,024 + -1.4 842,024 + -0.2 842,144 - +0.1
Or see this region's nucleotide sequence