Experiment: KB with Mexicanolide 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0636 and Psyr_0637 overlap by 4 nucleotides Psyr_0637 and Psyr_0638 are separated by 14 nucleotides Psyr_0638 and Psyr_0639 are separated by 84 nucleotides Psyr_0639 and Psyr_0640 are separated by 18 nucleotides
Psyr_0636: Psyr_0636 - LrgA, at 726,272 to 726,634
_0636
Psyr_0637: Psyr_0637 - LrgB-like protein, at 726,631 to 727,347
_0637
Psyr_0638: Psyr_0638 - Peptidase S16, lon N-terminal, at 727,362 to 727,952
_0638
Psyr_0639: Psyr_0639 - lipoprotein, putative, at 728,037 to 728,603
_0639
Psyr_0640: Psyr_0640 - lipoprotein, putative, at 728,622 to 729,260
_0640
Position (kb) 727
728 Strain fitness (log2 ratio) -2
-1
0
1 at 726.383 kb on - strand, within Psyr_0636 at 726.383 kb on - strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.390 kb on - strand, within Psyr_0636 at 726.390 kb on - strand, within Psyr_0636 at 726.498 kb on - strand, within Psyr_0636 at 726.498 kb on - strand, within Psyr_0636 at 726.498 kb on - strand at 726.498 kb on - strand, within Psyr_0636 at 726.710 kb on - strand, within Psyr_0637 at 726.817 kb on + strand, within Psyr_0637 at 726.817 kb on + strand, within Psyr_0637 at 726.817 kb on + strand, within Psyr_0637 at 726.817 kb on + strand, within Psyr_0637 at 726.817 kb on + strand, within Psyr_0637 at 726.895 kb on + strand, within Psyr_0637 at 726.896 kb on - strand, within Psyr_0637 at 726.903 kb on + strand, within Psyr_0637 at 726.903 kb on + strand, within Psyr_0637 at 727.131 kb on - strand, within Psyr_0637 at 727.345 kb on + strand at 727.346 kb on - strand at 727.362 kb on - strand at 727.496 kb on + strand, within Psyr_0638 at 727.497 kb on - strand, within Psyr_0638 at 727.809 kb on + strand, within Psyr_0638 at 727.834 kb on - strand, within Psyr_0638 at 727.982 kb on + strand at 728.180 kb on + strand, within Psyr_0639 at 728.180 kb on + strand, within Psyr_0639 at 728.180 kb on + strand, within Psyr_0639 at 728.181 kb on - strand, within Psyr_0639 at 728.181 kb on - strand, within Psyr_0639 at 728.181 kb on - strand, within Psyr_0639 at 728.206 kb on + strand, within Psyr_0639 at 728.206 kb on + strand, within Psyr_0639 at 728.206 kb on - strand, within Psyr_0639 at 728.207 kb on - strand, within Psyr_0639 at 728.207 kb on - strand, within Psyr_0639 at 728.284 kb on + strand, within Psyr_0639 at 728.284 kb on + strand, within Psyr_0639 at 728.285 kb on - strand, within Psyr_0639 at 728.591 kb on + strand at 728.636 kb on - strand at 728.789 kb on - strand, within Psyr_0640 at 728.789 kb on - strand, within Psyr_0640 at 728.845 kb on + strand, within Psyr_0640 at 728.872 kb on + strand, within Psyr_0640 at 728.873 kb on - strand, within Psyr_0640 at 728.875 kb on + strand, within Psyr_0640 at 728.884 kb on + strand, within Psyr_0640 at 728.884 kb on + strand, within Psyr_0640 at 728.885 kb on - strand, within Psyr_0640 at 728.938 kb on + strand, within Psyr_0640 at 728.938 kb on + strand, within Psyr_0640 at 728.938 kb on + strand, within Psyr_0640 at 728.939 kb on - strand, within Psyr_0640 at 728.939 kb on - strand, within Psyr_0640 at 728.939 kb on - strand, within Psyr_0640
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mexicanolide 10 mM remove 726,383 - Psyr_0636 0.31 -0.3 726,383 - Psyr_0636 0.31 -0.2 726,389 + Psyr_0636 0.32 -0.9 726,389 + Psyr_0636 0.32 +0.9 726,389 + Psyr_0636 0.32 +0.7 726,389 + Psyr_0636 0.32 +0.5 726,389 + Psyr_0636 0.32 +0.2 726,389 + Psyr_0636 0.32 -0.4 726,390 - Psyr_0636 0.33 +0.5 726,390 - Psyr_0636 0.33 +0.2 726,498 - Psyr_0636 0.62 -0.3 726,498 - Psyr_0636 0.62 +0.4 726,498 - +0.2 726,498 - Psyr_0636 0.62 +0.0 726,710 - Psyr_0637 0.11 +0.5 726,817 + Psyr_0637 0.26 -0.1 726,817 + Psyr_0637 0.26 -0.1 726,817 + Psyr_0637 0.26 +0.2 726,817 + Psyr_0637 0.26 -0.6 726,817 + Psyr_0637 0.26 -0.4 726,895 + Psyr_0637 0.37 +0.1 726,896 - Psyr_0637 0.37 +1.0 726,903 + Psyr_0637 0.38 +0.3 726,903 + Psyr_0637 0.38 -0.9 727,131 - Psyr_0637 0.70 +0.8 727,345 + +1.1 727,346 - -0.7 727,362 - +0.0 727,496 + Psyr_0638 0.23 -0.2 727,497 - Psyr_0638 0.23 -1.7 727,809 + Psyr_0638 0.76 -0.7 727,834 - Psyr_0638 0.80 -0.9 727,982 + -0.1 728,180 + Psyr_0639 0.25 +1.4 728,180 + Psyr_0639 0.25 +1.2 728,180 + Psyr_0639 0.25 -0.0 728,181 - Psyr_0639 0.25 -0.4 728,181 - Psyr_0639 0.25 -1.1 728,181 - Psyr_0639 0.25 -2.5 728,206 + Psyr_0639 0.30 +1.3 728,206 + Psyr_0639 0.30 -1.0 728,206 - Psyr_0639 0.30 +0.2 728,207 - Psyr_0639 0.30 +0.3 728,207 - Psyr_0639 0.30 +0.0 728,284 + Psyr_0639 0.44 +0.0 728,284 + Psyr_0639 0.44 -0.5 728,285 - Psyr_0639 0.44 -1.1 728,591 + -0.7 728,636 - -0.3 728,789 - Psyr_0640 0.26 +0.2 728,789 - Psyr_0640 0.26 +0.8 728,845 + Psyr_0640 0.35 +0.1 728,872 + Psyr_0640 0.39 +1.2 728,873 - Psyr_0640 0.39 +0.9 728,875 + Psyr_0640 0.40 +0.4 728,884 + Psyr_0640 0.41 +0.9 728,884 + Psyr_0640 0.41 +0.3 728,885 - Psyr_0640 0.41 +0.5 728,938 + Psyr_0640 0.49 +0.7 728,938 + Psyr_0640 0.49 +0.9 728,938 + Psyr_0640 0.49 -0.0 728,939 - Psyr_0640 0.50 -0.7 728,939 - Psyr_0640 0.50 +0.2 728,939 - Psyr_0640 0.50 +0.4
Or see this region's nucleotide sequence