Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0259

Experiment: KB with Mexicanolide 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0258 and Psyr_0259 are separated by 151 nucleotidesPsyr_0259 and Psyr_0260 are separated by 255 nucleotidesPsyr_0260 and Psyr_0261 are separated by 224 nucleotides Psyr_0258: Psyr_0258 - Two-component response regulator OmpR, at 274,133 to 274,873 _0258 Psyr_0259: Psyr_0259 - Osmolarity sensor protein envZ, at 275,025 to 276,347 _0259 Psyr_0260: Psyr_0260 - conserved hypothetical protein, at 276,603 to 277,070 _0260 Psyr_0261: Psyr_0261 - conserved hypothetical protein, at 277,295 to 277,582 _0261 Position (kb) 275 276 277Strain fitness (log2 ratio) -2 -1 0 1 2at 274.096 kb on + strandat 274.096 kb on + strandat 274.915 kb on + strandat 274.915 kb on + strandat 274.916 kb on - strandat 274.947 kb on + strandat 274.948 kb on - strandat 275.024 kb on + strandat 275.024 kb on + strandat 275.024 kb on + strandat 275.024 kb on + strandat 275.024 kb on + strandat 275.025 kb on - strandat 275.025 kb on - strandat 275.025 kb on - strandat 275.036 kb on + strandat 275.036 kb on + strandat 275.036 kb on + strandat 275.320 kb on - strand, within Psyr_0259at 276.072 kb on + strand, within Psyr_0259at 276.073 kb on - strand, within Psyr_0259at 276.076 kb on + strand, within Psyr_0259at 276.099 kb on + strand, within Psyr_0259at 276.099 kb on + strand, within Psyr_0259at 276.099 kb on + strand, within Psyr_0259at 276.099 kb on + strand, within Psyr_0259at 276.099 kb on + strand, within Psyr_0259at 276.100 kb on - strand, within Psyr_0259at 276.236 kb on + strandat 276.305 kb on - strandat 276.345 kb on + strandat 276.373 kb on + strandat 276.373 kb on + strandat 276.373 kb on + strandat 276.373 kb on + strandat 276.373 kb on + strandat 276.373 kb on + strandat 276.374 kb on - strandat 276.374 kb on - strandat 276.374 kb on - strandat 276.375 kb on + strandat 276.375 kb on + strandat 276.376 kb on - strandat 276.470 kb on + strandat 276.470 kb on + strandat 276.470 kb on + strandat 276.470 kb on + strandat 276.470 kb on + strandat 276.479 kb on + strandat 276.486 kb on - strandat 276.486 kb on - strandat 276.538 kb on + strandat 276.539 kb on - strandat 276.668 kb on + strand, within Psyr_0260at 276.668 kb on + strand, within Psyr_0260at 276.683 kb on - strand, within Psyr_0260at 276.683 kb on - strand, within Psyr_0260at 276.683 kb on - strand, within Psyr_0260at 276.749 kb on - strand, within Psyr_0260at 276.749 kb on - strand, within Psyr_0260at 276.803 kb on + strand, within Psyr_0260at 276.804 kb on - strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 277.071 kb on + strandat 277.187 kb on + strandat 277.187 kb on + strandat 277.187 kb on + strandat 277.243 kb on + strandat 277.244 kb on - strandat 277.263 kb on + strandat 277.263 kb on + strandat 277.263 kb on + strandat 277.267 kb on - strandat 277.331 kb on + strand, within Psyr_0261at 277.331 kb on + strand, within Psyr_0261at 277.332 kb on - strand, within Psyr_0261at 277.332 kb on - strand, within Psyr_0261at 277.332 kb on - strand, within Psyr_0261

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mexicanolide 10 mM
remove
274,096 + -0.2
274,096 + -0.7
274,915 + -0.6
274,915 + +1.0
274,916 - -1.0
274,947 + -0.4
274,948 - +0.6
275,024 + -1.6
275,024 + -0.8
275,024 + -0.8
275,024 + +0.1
275,024 + +0.3
275,025 - +0.1
275,025 - +0.1
275,025 - +0.2
275,036 + -0.9
275,036 + -0.7
275,036 + -1.8
275,320 - Psyr_0259 0.22 -1.7
276,072 + Psyr_0259 0.79 -2.4
276,073 - Psyr_0259 0.79 -0.7
276,076 + Psyr_0259 0.79 -0.0
276,099 + Psyr_0259 0.81 -1.3
276,099 + Psyr_0259 0.81 +0.2
276,099 + Psyr_0259 0.81 -1.5
276,099 + Psyr_0259 0.81 -2.0
276,099 + Psyr_0259 0.81 +0.6
276,100 - Psyr_0259 0.81 -0.4
276,236 + -2.1
276,305 - -1.7
276,345 + +0.1
276,373 + -1.5
276,373 + +1.4
276,373 + -0.2
276,373 + -1.6
276,373 + -1.4
276,373 + -0.2
276,374 - -0.8
276,374 - -0.3
276,374 - +0.2
276,375 + +0.9
276,375 + -0.3
276,376 - +1.3
276,470 + -0.0
276,470 + +0.2
276,470 + +0.0
276,470 + +1.1
276,470 + -0.9
276,479 + +0.3
276,486 - -0.5
276,486 - +0.9
276,538 + -0.4
276,539 - +0.9
276,668 + Psyr_0260 0.14 +0.6
276,668 + Psyr_0260 0.14 -0.8
276,683 - Psyr_0260 0.17 +1.3
276,683 - Psyr_0260 0.17 -0.3
276,683 - Psyr_0260 0.17 -0.5
276,749 - Psyr_0260 0.31 -0.3
276,749 - Psyr_0260 0.31 -0.5
276,803 + Psyr_0260 0.43 -0.8
276,804 - Psyr_0260 0.43 -0.2
276,835 + Psyr_0260 0.50 +0.1
276,835 + Psyr_0260 0.50 -0.0
276,835 + Psyr_0260 0.50 +0.4
276,835 + Psyr_0260 0.50 +0.1
276,835 + Psyr_0260 0.50 +0.7
276,835 + Psyr_0260 0.50 -0.0
276,835 + Psyr_0260 0.50 -0.1
276,835 + Psyr_0260 0.50 -0.2
276,835 + Psyr_0260 0.50 +0.2
276,836 - Psyr_0260 0.50 +0.6
276,836 - Psyr_0260 0.50 -0.7
276,836 - Psyr_0260 0.50 +0.3
276,836 - Psyr_0260 0.50 -0.7
276,836 - Psyr_0260 0.50 -0.2
276,836 - Psyr_0260 0.50 -0.3
276,836 - Psyr_0260 0.50 +2.6
276,836 - Psyr_0260 0.50 -0.6
276,836 - Psyr_0260 0.50 -0.6
277,071 + +0.1
277,187 + +0.2
277,187 + -0.5
277,187 + -1.3
277,243 + +0.2
277,244 - -0.3
277,263 + -0.2
277,263 + +1.9
277,263 + -1.4
277,267 - -0.4
277,331 + Psyr_0261 0.12 +0.4
277,331 + Psyr_0261 0.12 -0.3
277,332 - Psyr_0261 0.13 +0.0
277,332 - Psyr_0261 0.13 -0.4
277,332 - Psyr_0261 0.13 -0.8

Or see this region's nucleotide sequence