Experiment: Fructooligosaccharides (FOS) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0146 and BT0147 are separated by 99 nucleotides BT0147 and BT0148 are separated by 74 nucleotides
BT0146: BT0146 - unsaturated glucuronyl hydrolase (NCBI ptt file), at 149,679 to 150,899
BT0146
BT0147: BT0147 - hypothetical protein (NCBI ptt file), at 150,999 to 151,460
BT0147
BT0148: BT0148 - putative hemolysin (NCBI ptt file), at 151,535 to 152,824
BT0148
Position (kb) 150
151
152 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 150.031 kb on - strand, within BT0146 at 150.150 kb on - strand, within BT0146 at 150.216 kb on - strand, within BT0146 at 150.283 kb on - strand, within BT0146 at 150.283 kb on - strand, within BT0146 at 150.286 kb on + strand, within BT0146 at 150.287 kb on - strand, within BT0146 at 150.287 kb on - strand, within BT0146 at 150.288 kb on + strand, within BT0146 at 150.288 kb on + strand, within BT0146 at 150.320 kb on + strand, within BT0146 at 150.321 kb on - strand, within BT0146 at 150.347 kb on + strand, within BT0146 at 150.348 kb on - strand, within BT0146 at 150.348 kb on - strand, within BT0146 at 150.362 kb on - strand, within BT0146 at 150.367 kb on + strand, within BT0146 at 150.368 kb on - strand, within BT0146 at 150.369 kb on + strand, within BT0146 at 150.370 kb on - strand, within BT0146 at 150.370 kb on - strand, within BT0146 at 150.372 kb on - strand, within BT0146 at 150.377 kb on + strand, within BT0146 at 150.378 kb on - strand, within BT0146 at 150.381 kb on - strand, within BT0146 at 150.462 kb on + strand, within BT0146 at 150.480 kb on + strand, within BT0146 at 150.537 kb on + strand, within BT0146 at 150.690 kb on + strand, within BT0146 at 150.738 kb on + strand, within BT0146 at 150.776 kb on + strand, within BT0146 at 150.818 kb on + strand at 150.819 kb on - strand at 150.840 kb on + strand at 150.841 kb on - strand at 150.842 kb on + strand at 150.844 kb on + strand at 150.889 kb on + strand at 150.904 kb on - strand at 150.957 kb on + strand at 150.958 kb on - strand at 150.992 kb on + strand at 150.993 kb on - strand at 151.000 kb on + strand at 151.005 kb on - strand at 151.055 kb on + strand, within BT0147 at 151.056 kb on - strand, within BT0147 at 151.056 kb on - strand, within BT0147 at 151.086 kb on + strand, within BT0147 at 151.145 kb on + strand, within BT0147 at 151.206 kb on - strand, within BT0147 at 151.234 kb on + strand, within BT0147 at 151.235 kb on - strand, within BT0147 at 151.241 kb on + strand, within BT0147 at 151.250 kb on + strand, within BT0147 at 151.251 kb on - strand, within BT0147 at 151.251 kb on - strand, within BT0147 at 151.252 kb on + strand, within BT0147 at 151.252 kb on + strand, within BT0147 at 151.253 kb on - strand, within BT0147 at 151.253 kb on - strand, within BT0147 at 151.260 kb on - strand, within BT0147 at 151.264 kb on - strand, within BT0147 at 151.332 kb on - strand, within BT0147 at 151.339 kb on + strand, within BT0147 at 151.340 kb on - strand, within BT0147 at 151.460 kb on + strand at 151.465 kb on - strand at 151.493 kb on + strand at 151.499 kb on - strand at 151.502 kb on + strand at 151.502 kb on + strand at 151.505 kb on - strand at 151.596 kb on - strand at 151.621 kb on - strand at 151.714 kb on - strand, within BT0148 at 151.718 kb on + strand, within BT0148 at 151.718 kb on + strand, within BT0148 at 151.886 kb on - strand, within BT0148 at 152.018 kb on - strand, within BT0148 at 152.018 kb on - strand, within BT0148 at 152.036 kb on - strand, within BT0148 at 152.094 kb on + strand, within BT0148 at 152.104 kb on - strand, within BT0148
Per-strain Table
Position Strand Gene LocusTag Fraction Fructooligosaccharides (FOS) (C) remove 150,031 - BT0146 0.29 -0.5 150,150 - BT0146 0.39 +0.0 150,216 - BT0146 0.44 +1.9 150,283 - BT0146 0.49 +0.0 150,283 - BT0146 0.49 -1.3 150,286 + BT0146 0.50 +0.2 150,287 - BT0146 0.50 -1.0 150,287 - BT0146 0.50 -2.0 150,288 + BT0146 0.50 +0.6 150,288 + BT0146 0.50 -1.3 150,320 + BT0146 0.52 +0.6 150,321 - BT0146 0.53 -1.0 150,347 + BT0146 0.55 -0.5 150,348 - BT0146 0.55 -0.8 150,348 - BT0146 0.55 -2.3 150,362 - BT0146 0.56 -0.4 150,367 + BT0146 0.56 +0.0 150,368 - BT0146 0.56 -0.7 150,369 + BT0146 0.57 -0.9 150,370 - BT0146 0.57 -0.8 150,370 - BT0146 0.57 +1.0 150,372 - BT0146 0.57 -1.6 150,377 + BT0146 0.57 -1.2 150,378 - BT0146 0.57 +0.0 150,381 - BT0146 0.57 -0.8 150,462 + BT0146 0.64 -0.1 150,480 + BT0146 0.66 -0.8 150,537 + BT0146 0.70 -1.5 150,690 + BT0146 0.83 +0.0 150,738 + BT0146 0.87 -2.9 150,776 + BT0146 0.90 -1.5 150,818 + -3.0 150,819 - +0.5 150,840 + +0.0 150,841 - -2.3 150,842 + -0.2 150,844 + -2.0 150,889 + +1.2 150,904 - -0.2 150,957 + -1.0 150,958 - -0.9 150,992 + -0.5 150,993 - +0.3 151,000 + -1.8 151,005 - -0.1 151,055 + BT0147 0.12 -1.0 151,056 - BT0147 0.12 -2.9 151,056 - BT0147 0.12 -2.0 151,086 + BT0147 0.19 -1.0 151,145 + BT0147 0.32 -2.7 151,206 - BT0147 0.45 -1.3 151,234 + BT0147 0.51 -1.3 151,235 - BT0147 0.51 -0.5 151,241 + BT0147 0.52 -1.0 151,250 + BT0147 0.54 -2.4 151,251 - BT0147 0.55 -2.9 151,251 - BT0147 0.55 -1.4 151,252 + BT0147 0.55 -0.5 151,252 + BT0147 0.55 -1.3 151,253 - BT0147 0.55 -0.5 151,253 - BT0147 0.55 +2.0 151,260 - BT0147 0.56 -1.0 151,264 - BT0147 0.57 -1.5 151,332 - BT0147 0.72 -0.8 151,339 + BT0147 0.74 -1.0 151,340 - BT0147 0.74 -0.8 151,460 + -1.1 151,465 - -1.0 151,493 + -0.7 151,499 - +0.0 151,502 + -1.0 151,502 + -2.7 151,505 - +0.0 151,596 - +0.0 151,621 - -1.5 151,714 - BT0148 0.14 -1.0 151,718 + BT0148 0.14 -0.4 151,718 + BT0148 0.14 -1.0 151,886 - BT0148 0.27 +0.0 152,018 - BT0148 0.37 +0.6 152,018 - BT0148 0.37 +1.0 152,036 - BT0148 0.39 -1.1 152,094 + BT0148 0.43 +0.5 152,104 - BT0148 0.44 -2.3
Or see this region's nucleotide sequence