Experiment: KB with 2',5'-Dihydroxy-4-Methoxychalcone 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4878 and Psyr_4879 are separated by 433 nucleotides Psyr_4879 and Psyr_4880 are separated by 145 nucleotides Psyr_4880 and Psyr_4881 overlap by 2 nucleotides
Psyr_4878: Psyr_4878 - outer membrane porin, at 5,789,629 to 5,790,975
_4878
Psyr_4879: Psyr_4879 - hypothetical protein, at 5,791,409 to 5,791,852
_4879
Psyr_4880: Psyr_4880 - conserved hypothetical protein, at 5,791,998 to 5,792,438
_4880
Psyr_4881: Psyr_4881 - RNA methyltransferase TrmH, group 2, at 5,792,437 to 5,792,892
_4881
Position (kb) 5791
5792 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5790.471 kb on + strand, within Psyr_4878 at 5790.471 kb on + strand, within Psyr_4878 at 5790.472 kb on - strand, within Psyr_4878 at 5790.576 kb on + strand, within Psyr_4878 at 5790.597 kb on + strand, within Psyr_4878 at 5790.660 kb on + strand, within Psyr_4878 at 5790.660 kb on + strand, within Psyr_4878 at 5790.660 kb on + strand, within Psyr_4878 at 5790.660 kb on + strand, within Psyr_4878 at 5790.660 kb on + strand, within Psyr_4878 at 5790.678 kb on + strand, within Psyr_4878 at 5790.678 kb on + strand, within Psyr_4878 at 5790.681 kb on + strand, within Psyr_4878 at 5790.681 kb on + strand, within Psyr_4878 at 5790.681 kb on + strand, within Psyr_4878 at 5790.681 kb on + strand, within Psyr_4878 at 5790.681 kb on + strand, within Psyr_4878 at 5790.681 kb on + strand, within Psyr_4878 at 5790.681 kb on + strand, within Psyr_4878 at 5790.682 kb on - strand, within Psyr_4878 at 5790.697 kb on - strand, within Psyr_4878 at 5790.733 kb on + strand, within Psyr_4878 at 5790.775 kb on - strand, within Psyr_4878 at 5790.863 kb on + strand at 5790.863 kb on + strand at 5790.863 kb on + strand at 5790.863 kb on + strand at 5790.864 kb on - strand at 5790.870 kb on + strand at 5790.871 kb on - strand at 5790.871 kb on - strand at 5790.892 kb on - strand at 5790.892 kb on - strand at 5790.934 kb on + strand at 5790.934 kb on + strand at 5790.934 kb on + strand at 5790.935 kb on - strand at 5790.935 kb on - strand at 5790.976 kb on + strand at 5790.976 kb on + strand at 5790.976 kb on + strand at 5790.976 kb on + strand at 5790.977 kb on - strand at 5790.977 kb on - strand at 5790.977 kb on - strand at 5790.979 kb on + strand at 5790.979 kb on + strand at 5790.979 kb on + strand at 5790.980 kb on - strand at 5790.980 kb on - strand at 5790.980 kb on - strand at 5790.980 kb on - strand at 5790.980 kb on - strand at 5790.980 kb on - strand at 5791.004 kb on + strand at 5791.006 kb on + strand at 5791.043 kb on - strand at 5791.102 kb on + strand at 5791.103 kb on - strand at 5791.103 kb on - strand at 5791.103 kb on - strand at 5791.240 kb on + strand at 5791.258 kb on + strand at 5791.374 kb on + strand at 5791.375 kb on - strand at 5791.375 kb on - strand at 5791.405 kb on + strand at 5791.405 kb on + strand at 5791.406 kb on - strand at 5791.406 kb on - strand at 5791.406 kb on - strand at 5791.525 kb on + strand, within Psyr_4879 at 5791.730 kb on + strand, within Psyr_4879 at 5791.730 kb on + strand, within Psyr_4879 at 5791.731 kb on - strand, within Psyr_4879 at 5791.731 kb on - strand, within Psyr_4879 at 5791.731 kb on - strand, within Psyr_4879 at 5791.731 kb on - strand, within Psyr_4879 at 5791.776 kb on - strand, within Psyr_4879 at 5791.811 kb on - strand at 5791.817 kb on - strand at 5791.835 kb on + strand at 5791.836 kb on - strand at 5791.851 kb on - strand at 5791.938 kb on + strand at 5791.938 kb on + strand at 5791.938 kb on + strand at 5791.938 kb on + strand at 5791.938 kb on + strand at 5791.938 kb on + strand at 5791.939 kb on - strand at 5791.939 kb on - strand at 5791.942 kb on + strand at 5791.943 kb on - strand at 5791.943 kb on - strand at 5791.943 kb on - strand at 5791.943 kb on - strand at 5791.943 kb on - strand at 5791.943 kb on - strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.946 kb on - strand at 5791.946 kb on - strand at 5791.946 kb on - strand at 5791.946 kb on - strand at 5791.946 kb on - strand at 5791.971 kb on + strand at 5791.971 kb on + strand at 5791.972 kb on - strand at 5791.972 kb on - strand at 5791.999 kb on + strand at 5791.999 kb on + strand at 5791.999 kb on + strand at 5791.999 kb on + strand at 5791.999 kb on + strand at 5791.999 kb on + strand at 5792.000 kb on - strand at 5792.000 kb on - strand at 5792.118 kb on + strand, within Psyr_4880 at 5792.119 kb on - strand, within Psyr_4880 at 5792.119 kb on - strand, within Psyr_4880 at 5792.194 kb on - strand, within Psyr_4880 at 5792.194 kb on - strand, within Psyr_4880 at 5792.194 kb on - strand, within Psyr_4880 at 5792.373 kb on + strand, within Psyr_4880 at 5792.374 kb on - strand, within Psyr_4880 at 5792.384 kb on + strand, within Psyr_4880 at 5792.385 kb on - strand, within Psyr_4880 at 5792.403 kb on - strand at 5792.403 kb on - strand at 5792.499 kb on - strand, within Psyr_4881 at 5792.596 kb on + strand, within Psyr_4881 at 5792.596 kb on + strand, within Psyr_4881 at 5792.596 kb on + strand, within Psyr_4881 at 5792.596 kb on + strand, within Psyr_4881 at 5792.597 kb on - strand, within Psyr_4881 at 5792.829 kb on + strand, within Psyr_4881
Per-strain Table
Position Strand Gene LocusTag Fraction KB with 2',5'-Dihydroxy-4-Methoxychalcone 10 mM remove 5,790,471 + Psyr_4878 0.63 +1.1 5,790,471 + Psyr_4878 0.63 +0.0 5,790,472 - Psyr_4878 0.63 +0.0 5,790,576 + Psyr_4878 0.70 +0.6 5,790,597 + Psyr_4878 0.72 -1.1 5,790,660 + Psyr_4878 0.77 -0.7 5,790,660 + Psyr_4878 0.77 +0.3 5,790,660 + Psyr_4878 0.77 -0.1 5,790,660 + Psyr_4878 0.77 +0.1 5,790,660 + Psyr_4878 0.77 +0.4 5,790,678 + Psyr_4878 0.78 -0.7 5,790,678 + Psyr_4878 0.78 +1.2 5,790,681 + Psyr_4878 0.78 -0.5 5,790,681 + Psyr_4878 0.78 -1.1 5,790,681 + Psyr_4878 0.78 +0.6 5,790,681 + Psyr_4878 0.78 -0.1 5,790,681 + Psyr_4878 0.78 -0.4 5,790,681 + Psyr_4878 0.78 -0.1 5,790,681 + Psyr_4878 0.78 -0.2 5,790,682 - Psyr_4878 0.78 +0.7 5,790,697 - Psyr_4878 0.79 -0.0 5,790,733 + Psyr_4878 0.82 +0.6 5,790,775 - Psyr_4878 0.85 +0.2 5,790,863 + -0.1 5,790,863 + +0.2 5,790,863 + +0.3 5,790,863 + +0.4 5,790,864 - +0.6 5,790,870 + +0.3 5,790,871 - -0.3 5,790,871 - -0.6 5,790,892 - +0.0 5,790,892 - -0.1 5,790,934 + +0.2 5,790,934 + -0.1 5,790,934 + -0.7 5,790,935 - +0.8 5,790,935 - -0.8 5,790,976 + -0.4 5,790,976 + +1.1 5,790,976 + +0.6 5,790,976 + -0.1 5,790,977 - +1.1 5,790,977 - +0.4 5,790,977 - +0.4 5,790,979 + -0.1 5,790,979 + +0.5 5,790,979 + -0.1 5,790,980 - -1.4 5,790,980 - +0.5 5,790,980 - -0.0 5,790,980 - +1.3 5,790,980 - +0.4 5,790,980 - -0.4 5,791,004 + +0.6 5,791,006 + +0.5 5,791,043 - +0.4 5,791,102 + -0.7 5,791,103 - -0.3 5,791,103 - +0.3 5,791,103 - +0.7 5,791,240 + -1.0 5,791,258 + -0.2 5,791,374 + -0.3 5,791,375 - +0.4 5,791,375 - +0.5 5,791,405 + +0.3 5,791,405 + -0.5 5,791,406 - -0.0 5,791,406 - +0.3 5,791,406 - -0.2 5,791,525 + Psyr_4879 0.26 -0.5 5,791,730 + Psyr_4879 0.72 -0.4 5,791,730 + Psyr_4879 0.72 -2.4 5,791,731 - Psyr_4879 0.73 -2.5 5,791,731 - Psyr_4879 0.73 +1.3 5,791,731 - Psyr_4879 0.73 -0.8 5,791,731 - Psyr_4879 0.73 -0.3 5,791,776 - Psyr_4879 0.83 -0.8 5,791,811 - -0.7 5,791,817 - +0.1 5,791,835 + -0.5 5,791,836 - -1.4 5,791,851 - -1.6 5,791,938 + -0.3 5,791,938 + -0.0 5,791,938 + -0.4 5,791,938 + -0.4 5,791,938 + +1.2 5,791,938 + -0.6 5,791,939 - -0.3 5,791,939 - -0.9 5,791,942 + -1.1 5,791,943 - +0.8 5,791,943 - -0.2 5,791,943 - -1.1 5,791,943 - -1.3 5,791,943 - -0.3 5,791,943 - -0.7 5,791,945 + -2.5 5,791,945 + -0.1 5,791,945 + -1.2 5,791,945 + +0.3 5,791,945 + -1.5 5,791,945 + +1.3 5,791,945 + -0.5 5,791,946 - +0.3 5,791,946 - -1.8 5,791,946 - +1.3 5,791,946 - +0.7 5,791,946 - +2.3 5,791,971 + -0.3 5,791,971 + +3.2 5,791,972 - -1.0 5,791,972 - +1.0 5,791,999 + +0.3 5,791,999 + -1.7 5,791,999 + +0.3 5,791,999 + +0.5 5,791,999 + -0.6 5,791,999 + +1.0 5,792,000 - -0.3 5,792,000 - -0.3 5,792,118 + Psyr_4880 0.27 -0.9 5,792,119 - Psyr_4880 0.27 -0.3 5,792,119 - Psyr_4880 0.27 -0.7 5,792,194 - Psyr_4880 0.44 -0.1 5,792,194 - Psyr_4880 0.44 +0.3 5,792,194 - Psyr_4880 0.44 +0.7 5,792,373 + Psyr_4880 0.85 -0.1 5,792,374 - Psyr_4880 0.85 -0.2 5,792,384 + Psyr_4880 0.88 -0.0 5,792,385 - Psyr_4880 0.88 +0.6 5,792,403 - +0.4 5,792,403 - +1.8 5,792,499 - Psyr_4881 0.14 -0.2 5,792,596 + Psyr_4881 0.35 -0.9 5,792,596 + Psyr_4881 0.35 +0.2 5,792,596 + Psyr_4881 0.35 -0.5 5,792,596 + Psyr_4881 0.35 -1.4 5,792,597 - Psyr_4881 0.35 +0.3 5,792,829 + Psyr_4881 0.86 -0.7
Or see this region's nucleotide sequence