Experiment: KB with 2',5'-Dihydroxy-4-Methoxychalcone 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3556 and Psyr_3557 are separated by 69 nucleotides Psyr_3557 and Psyr_3558 are separated by 504 nucleotides
Psyr_3556: Psyr_3556 - alanyl-tRNA synthetase, at 4,235,102 to 4,237,801
_3556
Psyr_3557: Psyr_3557 - L-threonine aldolase, at 4,237,871 to 4,238,875
_3557
Psyr_3558: Psyr_3558 - 6,7-dimethyl-8-ribityllumazine synthase, at 4,239,380 to 4,239,892
_3558
Position (kb) 4237
4238
4239 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4237.803 kb on - strand at 4237.803 kb on - strand at 4237.803 kb on - strand at 4237.803 kb on - strand at 4237.803 kb on - strand at 4237.805 kb on - strand at 4237.805 kb on - strand at 4237.805 kb on - strand at 4237.807 kb on - strand at 4237.853 kb on - strand at 4237.853 kb on - strand at 4237.853 kb on - strand at 4237.853 kb on - strand at 4237.974 kb on - strand, within Psyr_3557 at 4238.035 kb on - strand, within Psyr_3557 at 4238.035 kb on - strand, within Psyr_3557 at 4238.035 kb on - strand, within Psyr_3557 at 4238.035 kb on - strand, within Psyr_3557 at 4238.035 kb on - strand, within Psyr_3557 at 4238.152 kb on - strand, within Psyr_3557 at 4238.152 kb on - strand, within Psyr_3557 at 4238.359 kb on - strand, within Psyr_3557 at 4238.610 kb on + strand, within Psyr_3557 at 4238.610 kb on + strand, within Psyr_3557 at 4238.610 kb on + strand, within Psyr_3557 at 4238.610 kb on + strand, within Psyr_3557 at 4238.610 kb on + strand, within Psyr_3557 at 4238.610 kb on + strand, within Psyr_3557 at 4238.610 kb on + strand, within Psyr_3557 at 4238.611 kb on - strand, within Psyr_3557 at 4238.614 kb on + strand, within Psyr_3557 at 4238.614 kb on + strand, within Psyr_3557 at 4238.614 kb on + strand, within Psyr_3557 at 4238.614 kb on + strand, within Psyr_3557 at 4238.614 kb on + strand, within Psyr_3557 at 4238.614 kb on + strand, within Psyr_3557 at 4238.614 kb on + strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.617 kb on - strand, within Psyr_3557 at 4238.617 kb on - strand, within Psyr_3557 at 4238.617 kb on - strand, within Psyr_3557 at 4238.617 kb on - strand, within Psyr_3557 at 4238.617 kb on - strand, within Psyr_3557 at 4238.617 kb on - strand, within Psyr_3557 at 4238.643 kb on + strand, within Psyr_3557 at 4238.643 kb on + strand, within Psyr_3557 at 4238.643 kb on + strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.952 kb on + strand at 4238.952 kb on + strand at 4238.952 kb on + strand at 4238.952 kb on + strand at 4238.952 kb on + strand at 4238.952 kb on + strand at 4238.952 kb on + strand at 4238.952 kb on + strand at 4238.952 kb on + strand at 4238.953 kb on - strand at 4238.953 kb on - strand at 4238.953 kb on - strand at 4238.953 kb on - strand at 4238.953 kb on - strand at 4238.953 kb on - strand at 4238.953 kb on - strand at 4238.953 kb on - strand at 4238.953 kb on - strand at 4238.953 kb on - strand at 4238.960 kb on - strand at 4238.995 kb on + strand at 4238.995 kb on + strand at 4238.995 kb on + strand at 4238.996 kb on - strand at 4239.012 kb on + strand at 4239.012 kb on + strand at 4239.012 kb on + strand at 4239.013 kb on - strand at 4239.013 kb on - strand at 4239.013 kb on - strand at 4239.014 kb on + strand at 4239.015 kb on - strand at 4239.015 kb on - strand at 4239.015 kb on - strand at 4239.050 kb on + strand at 4239.050 kb on + strand at 4239.050 kb on + strand at 4239.051 kb on - strand at 4239.051 kb on - strand at 4239.051 kb on - strand at 4239.051 kb on - strand at 4239.051 kb on - strand at 4239.051 kb on - strand at 4239.077 kb on + strand at 4239.077 kb on + strand at 4239.078 kb on - strand at 4239.145 kb on + strand at 4239.182 kb on + strand at 4239.229 kb on + strand at 4239.229 kb on + strand at 4239.277 kb on - strand at 4239.277 kb on - strand at 4239.284 kb on - strand at 4239.316 kb on + strand at 4239.481 kb on + strand, within Psyr_3558 at 4239.647 kb on + strand, within Psyr_3558 at 4239.647 kb on + strand, within Psyr_3558 at 4239.648 kb on - strand, within Psyr_3558 at 4239.648 kb on - strand, within Psyr_3558 at 4239.648 kb on - strand, within Psyr_3558 at 4239.648 kb on - strand, within Psyr_3558 at 4239.648 kb on - strand, within Psyr_3558
Per-strain Table
Position Strand Gene LocusTag Fraction KB with 2',5'-Dihydroxy-4-Methoxychalcone 10 mM remove 4,237,803 - -0.4 4,237,803 - -0.5 4,237,803 - +0.4 4,237,803 - -0.4 4,237,803 - -1.1 4,237,805 - +0.6 4,237,805 - +0.7 4,237,805 - -1.5 4,237,807 - -0.3 4,237,853 - +4.1 4,237,853 - +0.5 4,237,853 - -2.1 4,237,853 - +3.4 4,237,974 - Psyr_3557 0.10 +0.7 4,238,035 - Psyr_3557 0.16 -0.4 4,238,035 - Psyr_3557 0.16 +1.1 4,238,035 - Psyr_3557 0.16 +2.9 4,238,035 - Psyr_3557 0.16 -0.5 4,238,035 - Psyr_3557 0.16 +0.4 4,238,152 - Psyr_3557 0.28 -0.2 4,238,152 - Psyr_3557 0.28 -0.3 4,238,359 - Psyr_3557 0.49 +0.9 4,238,610 + Psyr_3557 0.74 -1.4 4,238,610 + Psyr_3557 0.74 +0.1 4,238,610 + Psyr_3557 0.74 -0.9 4,238,610 + Psyr_3557 0.74 -0.4 4,238,610 + Psyr_3557 0.74 -1.1 4,238,610 + Psyr_3557 0.74 -1.1 4,238,610 + Psyr_3557 0.74 -2.7 4,238,611 - Psyr_3557 0.74 -0.3 4,238,614 + Psyr_3557 0.74 +1.1 4,238,614 + Psyr_3557 0.74 +0.3 4,238,614 + Psyr_3557 0.74 -1.8 4,238,614 + Psyr_3557 0.74 +0.1 4,238,614 + Psyr_3557 0.74 -1.1 4,238,614 + Psyr_3557 0.74 -0.5 4,238,614 + Psyr_3557 0.74 -0.9 4,238,615 - Psyr_3557 0.74 -0.6 4,238,615 - Psyr_3557 0.74 +0.5 4,238,615 - Psyr_3557 0.74 -0.7 4,238,615 - Psyr_3557 0.74 -1.3 4,238,615 - Psyr_3557 0.74 +0.1 4,238,615 - Psyr_3557 0.74 +1.1 4,238,615 - Psyr_3557 0.74 +0.4 4,238,615 - Psyr_3557 0.74 -0.2 4,238,616 + Psyr_3557 0.74 -0.7 4,238,616 + Psyr_3557 0.74 -0.4 4,238,616 + Psyr_3557 0.74 -0.7 4,238,616 + Psyr_3557 0.74 -0.5 4,238,616 + Psyr_3557 0.74 -0.4 4,238,616 + Psyr_3557 0.74 -1.8 4,238,616 + Psyr_3557 0.74 -0.1 4,238,616 + Psyr_3557 0.74 -1.5 4,238,616 + Psyr_3557 0.74 -0.2 4,238,617 - Psyr_3557 0.74 +0.3 4,238,617 - Psyr_3557 0.74 +0.1 4,238,617 - Psyr_3557 0.74 -0.9 4,238,617 - Psyr_3557 0.74 +0.6 4,238,617 - Psyr_3557 0.74 -0.6 4,238,617 - Psyr_3557 0.74 +0.1 4,238,643 + Psyr_3557 0.77 -1.3 4,238,643 + Psyr_3557 0.77 -1.5 4,238,643 + Psyr_3557 0.77 -2.4 4,238,644 - Psyr_3557 0.77 +0.6 4,238,644 - Psyr_3557 0.77 +0.7 4,238,644 - Psyr_3557 0.77 -0.5 4,238,644 - Psyr_3557 0.77 -0.8 4,238,644 - Psyr_3557 0.77 -2.1 4,238,644 - Psyr_3557 0.77 +0.9 4,238,644 - Psyr_3557 0.77 -0.1 4,238,644 - Psyr_3557 0.77 +0.6 4,238,644 - Psyr_3557 0.77 +0.0 4,238,644 - Psyr_3557 0.77 +1.1 4,238,952 + -1.2 4,238,952 + -1.5 4,238,952 + +1.0 4,238,952 + +0.7 4,238,952 + -0.7 4,238,952 + -1.5 4,238,952 + +0.8 4,238,952 + -0.9 4,238,952 + -0.7 4,238,953 - +0.0 4,238,953 - -1.1 4,238,953 - -0.5 4,238,953 - +1.1 4,238,953 - -0.7 4,238,953 - -1.1 4,238,953 - -1.1 4,238,953 - +0.8 4,238,953 - +0.4 4,238,953 - +0.4 4,238,960 - -0.3 4,238,995 + -0.5 4,238,995 + +0.3 4,238,995 + -0.8 4,238,996 - +1.1 4,239,012 + +0.1 4,239,012 + -0.8 4,239,012 + -0.8 4,239,013 - +0.2 4,239,013 - +0.1 4,239,013 - -0.6 4,239,014 + -2.2 4,239,015 - +0.3 4,239,015 - -0.7 4,239,015 - +0.8 4,239,050 + +0.5 4,239,050 + +0.4 4,239,050 + -3.3 4,239,051 - +0.7 4,239,051 - +0.3 4,239,051 - +1.2 4,239,051 - +1.1 4,239,051 - +1.1 4,239,051 - -1.6 4,239,077 + +1.7 4,239,077 + -1.7 4,239,078 - -0.3 4,239,145 + -0.3 4,239,182 + -0.5 4,239,229 + -2.6 4,239,229 + +1.6 4,239,277 - -0.0 4,239,277 - +0.5 4,239,284 - -0.0 4,239,316 + +0.1 4,239,481 + Psyr_3558 0.20 +0.1 4,239,647 + Psyr_3558 0.52 -0.5 4,239,647 + Psyr_3558 0.52 -0.5 4,239,648 - Psyr_3558 0.52 -1.5 4,239,648 - Psyr_3558 0.52 +0.5 4,239,648 - Psyr_3558 0.52 +1.1 4,239,648 - Psyr_3558 0.52 +1.1 4,239,648 - Psyr_3558 0.52 +0.3
Or see this region's nucleotide sequence