Experiment: KB with 2',5'-Dihydroxy-4-Methoxychalcone 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3106 and Psyr_3107 are separated by 518 nucleotides Psyr_3107 and Psyr_3108 are separated by 93 nucleotides Psyr_3108 and Psyr_3109 overlap by 25 nucleotides
Psyr_3106: Psyr_3106 - phosphate ABC transporter substrate-binding protein, PhoT family, at 3,723,649 to 3,724,668
_3106
Psyr_3107: Psyr_3107 - conserved hypothetical protein, at 3,725,187 to 3,725,471
_3107
Psyr_3108: Psyr_3108 - conserved hypothetical protein, at 3,725,565 to 3,725,867
_3108
Psyr_3109: Psyr_3109 - conserved hypothetical protein, at 3,725,843 to 3,727,546
_3109
Position (kb)
3725
3726 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3724.503 kb on - strand, within Psyr_3106 at 3724.532 kb on + strand, within Psyr_3106 at 3724.588 kb on + strand at 3724.589 kb on - strand at 3724.589 kb on - strand at 3724.589 kb on - strand at 3724.589 kb on - strand at 3724.674 kb on + strand at 3724.675 kb on - strand at 3724.675 kb on - strand at 3724.708 kb on + strand at 3724.708 kb on + strand at 3724.708 kb on + strand at 3724.708 kb on + strand at 3724.709 kb on - strand at 3724.709 kb on - strand at 3724.751 kb on + strand at 3724.863 kb on - strand at 3724.863 kb on - strand at 3724.863 kb on - strand at 3724.924 kb on - strand at 3724.980 kb on + strand at 3724.987 kb on - strand at 3724.987 kb on - strand at 3725.082 kb on - strand at 3725.102 kb on + strand at 3725.103 kb on - strand at 3725.132 kb on + strand at 3725.132 kb on + strand at 3725.133 kb on - strand at 3725.161 kb on + strand at 3725.162 kb on - strand at 3725.166 kb on + strand at 3725.166 kb on + strand at 3725.181 kb on - strand at 3725.236 kb on + strand, within Psyr_3107 at 3725.236 kb on + strand, within Psyr_3107 at 3725.236 kb on + strand, within Psyr_3107 at 3725.237 kb on - strand, within Psyr_3107 at 3725.237 kb on - strand, within Psyr_3107 at 3725.237 kb on - strand, within Psyr_3107 at 3725.483 kb on - strand at 3725.524 kb on - strand at 3725.546 kb on + strand at 3725.547 kb on - strand at 3725.550 kb on + strand at 3725.576 kb on + strand at 3725.576 kb on + strand at 3725.577 kb on - strand at 3725.577 kb on - strand at 3725.577 kb on - strand at 3725.590 kb on + strand at 3725.591 kb on - strand at 3725.591 kb on - strand at 3725.591 kb on - strand at 3725.922 kb on + strand at 3725.922 kb on + strand at 3725.923 kb on - strand at 3725.923 kb on - strand at 3726.083 kb on + strand, within Psyr_3109 at 3726.083 kb on + strand, within Psyr_3109 at 3726.083 kb on + strand, within Psyr_3109 at 3726.083 kb on + strand, within Psyr_3109 at 3726.084 kb on - strand, within Psyr_3109 at 3726.084 kb on - strand, within Psyr_3109 at 3726.084 kb on - strand, within Psyr_3109 at 3726.084 kb on - strand, within Psyr_3109 at 3726.183 kb on - strand, within Psyr_3109 at 3726.205 kb on - strand, within Psyr_3109 at 3726.240 kb on + strand, within Psyr_3109 at 3726.241 kb on - strand, within Psyr_3109 at 3726.279 kb on - strand, within Psyr_3109 at 3726.297 kb on + strand, within Psyr_3109 at 3726.297 kb on + strand, within Psyr_3109 at 3726.297 kb on + strand, within Psyr_3109 at 3726.298 kb on - strand, within Psyr_3109 at 3726.298 kb on - strand, within Psyr_3109 at 3726.298 kb on - strand, within Psyr_3109 at 3726.298 kb on - strand, within Psyr_3109 at 3726.298 kb on - strand, within Psyr_3109 at 3726.426 kb on + strand, within Psyr_3109 at 3726.426 kb on + strand, within Psyr_3109 at 3726.427 kb on - strand, within Psyr_3109 at 3726.427 kb on - strand, within Psyr_3109 at 3726.427 kb on - strand, within Psyr_3109 at 3726.427 kb on - strand, within Psyr_3109 at 3726.468 kb on - strand, within Psyr_3109
Per-strain Table
Position Strand Gene LocusTag Fraction KB with 2',5'-Dihydroxy-4-Methoxychalcone 10 mM remove 3,724,503 - Psyr_3106 0.84 +0.4 3,724,532 + Psyr_3106 0.87 +1.5 3,724,588 + -0.7 3,724,589 - +1.0 3,724,589 - -0.6 3,724,589 - -1.0 3,724,589 - +0.8 3,724,674 + -0.3 3,724,675 - +0.7 3,724,675 - +0.7 3,724,708 + +1.0 3,724,708 + -0.1 3,724,708 + -0.3 3,724,708 + +0.1 3,724,709 - +1.0 3,724,709 - +0.5 3,724,751 + -0.4 3,724,863 - -0.2 3,724,863 - -0.7 3,724,863 - -1.0 3,724,924 - +0.4 3,724,980 + +0.9 3,724,987 - +0.3 3,724,987 - +0.4 3,725,082 - -1.6 3,725,102 + +0.6 3,725,103 - -0.8 3,725,132 + -1.0 3,725,132 + +0.5 3,725,133 - +0.7 3,725,161 + -1.1 3,725,162 - -1.0 3,725,166 + -0.2 3,725,166 + -0.9 3,725,181 - -3.0 3,725,236 + Psyr_3107 0.17 -1.0 3,725,236 + Psyr_3107 0.17 -0.5 3,725,236 + Psyr_3107 0.17 -0.1 3,725,237 - Psyr_3107 0.18 +0.4 3,725,237 - Psyr_3107 0.18 -1.0 3,725,237 - Psyr_3107 0.18 -1.3 3,725,483 - -0.8 3,725,524 - +1.3 3,725,546 + +0.0 3,725,547 - -0.2 3,725,550 + +1.3 3,725,576 + -1.9 3,725,576 + +0.7 3,725,577 - +0.4 3,725,577 - +0.3 3,725,577 - +0.5 3,725,590 + +0.2 3,725,591 - +2.6 3,725,591 - +1.2 3,725,591 - +1.4 3,725,922 + -0.5 3,725,922 + -1.8 3,725,923 - -1.0 3,725,923 - -0.1 3,726,083 + Psyr_3109 0.14 +0.6 3,726,083 + Psyr_3109 0.14 +0.9 3,726,083 + Psyr_3109 0.14 -0.1 3,726,083 + Psyr_3109 0.14 -0.7 3,726,084 - Psyr_3109 0.14 +0.4 3,726,084 - Psyr_3109 0.14 -0.8 3,726,084 - Psyr_3109 0.14 +0.6 3,726,084 - Psyr_3109 0.14 -0.1 3,726,183 - Psyr_3109 0.20 -2.8 3,726,205 - Psyr_3109 0.21 -0.3 3,726,240 + Psyr_3109 0.23 +1.7 3,726,241 - Psyr_3109 0.23 -0.2 3,726,279 - Psyr_3109 0.26 +0.2 3,726,297 + Psyr_3109 0.27 -0.3 3,726,297 + Psyr_3109 0.27 -0.1 3,726,297 + Psyr_3109 0.27 -0.2 3,726,298 - Psyr_3109 0.27 -0.4 3,726,298 - Psyr_3109 0.27 -2.2 3,726,298 - Psyr_3109 0.27 -0.4 3,726,298 - Psyr_3109 0.27 +1.0 3,726,298 - Psyr_3109 0.27 -0.2 3,726,426 + Psyr_3109 0.34 +0.2 3,726,426 + Psyr_3109 0.34 -2.1 3,726,427 - Psyr_3109 0.34 -1.0 3,726,427 - Psyr_3109 0.34 +1.6 3,726,427 - Psyr_3109 0.34 +0.8 3,726,427 - Psyr_3109 0.34 +0.4 3,726,468 - Psyr_3109 0.37 +0.2
Or see this region's nucleotide sequence