Experiment: KB with 2',5'-Dihydroxy-4-Methoxychalcone 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2059 and Psyr_2060 are separated by 102 nucleotides Psyr_2060 and Psyr_2061 are separated by 180 nucleotides
Psyr_2059: Psyr_2059 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 2,405,242 to 2,406,717
_2059
Psyr_2060: Psyr_2060 - Sec-independent protein translocase TatD, at 2,406,820 to 2,407,641
_2060
Psyr_2061: Psyr_2061 - SLT, at 2,407,822 to 2,409,243
_2061
Position (kb)
2406
2407
2408 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2406.501 kb on - strand, within Psyr_2059 at 2406.508 kb on + strand, within Psyr_2059 at 2406.509 kb on - strand, within Psyr_2059 at 2406.513 kb on + strand, within Psyr_2059 at 2406.514 kb on - strand, within Psyr_2059 at 2406.626 kb on + strand at 2406.683 kb on + strand at 2406.683 kb on + strand at 2406.684 kb on - strand at 2406.684 kb on - strand at 2406.684 kb on - strand at 2406.822 kb on - strand at 2406.925 kb on + strand, within Psyr_2060 at 2406.925 kb on + strand, within Psyr_2060 at 2406.925 kb on + strand, within Psyr_2060 at 2406.925 kb on + strand, within Psyr_2060 at 2407.133 kb on + strand, within Psyr_2060 at 2407.337 kb on + strand, within Psyr_2060 at 2407.337 kb on + strand, within Psyr_2060 at 2407.337 kb on + strand, within Psyr_2060 at 2407.562 kb on + strand at 2407.647 kb on + strand at 2407.989 kb on + strand, within Psyr_2061 at 2407.990 kb on - strand, within Psyr_2061 at 2408.032 kb on + strand, within Psyr_2061 at 2408.032 kb on + strand, within Psyr_2061 at 2408.033 kb on - strand, within Psyr_2061 at 2408.458 kb on + strand, within Psyr_2061 at 2408.459 kb on - strand, within Psyr_2061 at 2408.560 kb on - strand, within Psyr_2061 at 2408.626 kb on + strand, within Psyr_2061 at 2408.626 kb on + strand, within Psyr_2061 at 2408.626 kb on + strand, within Psyr_2061 at 2408.626 kb on + strand, within Psyr_2061 at 2408.627 kb on - strand, within Psyr_2061 at 2408.627 kb on - strand, within Psyr_2061 at 2408.627 kb on - strand, within Psyr_2061 at 2408.627 kb on - strand, within Psyr_2061 at 2408.627 kb on - strand, within Psyr_2061 at 2408.628 kb on + strand, within Psyr_2061 at 2408.629 kb on - strand, within Psyr_2061
Per-strain Table
Position Strand Gene LocusTag Fraction KB with 2',5'-Dihydroxy-4-Methoxychalcone 10 mM remove 2,406,501 - Psyr_2059 0.85 -2.1 2,406,508 + Psyr_2059 0.86 +0.6 2,406,509 - Psyr_2059 0.86 -0.2 2,406,513 + Psyr_2059 0.86 -0.2 2,406,514 - Psyr_2059 0.86 -1.9 2,406,626 + +0.4 2,406,683 + +0.2 2,406,683 + +1.9 2,406,684 - +0.8 2,406,684 - -1.1 2,406,684 - -0.4 2,406,822 - -0.0 2,406,925 + Psyr_2060 0.13 -0.7 2,406,925 + Psyr_2060 0.13 +0.2 2,406,925 + Psyr_2060 0.13 +0.3 2,406,925 + Psyr_2060 0.13 -1.5 2,407,133 + Psyr_2060 0.38 -0.5 2,407,337 + Psyr_2060 0.63 -1.3 2,407,337 + Psyr_2060 0.63 -1.5 2,407,337 + Psyr_2060 0.63 -0.1 2,407,562 + -0.5 2,407,647 + -0.7 2,407,989 + Psyr_2061 0.12 -1.2 2,407,990 - Psyr_2061 0.12 +0.3 2,408,032 + Psyr_2061 0.15 +0.2 2,408,032 + Psyr_2061 0.15 +0.5 2,408,033 - Psyr_2061 0.15 +0.1 2,408,458 + Psyr_2061 0.45 +0.3 2,408,459 - Psyr_2061 0.45 +1.7 2,408,560 - Psyr_2061 0.52 +0.9 2,408,626 + Psyr_2061 0.57 +0.1 2,408,626 + Psyr_2061 0.57 +1.6 2,408,626 + Psyr_2061 0.57 +0.4 2,408,626 + Psyr_2061 0.57 +1.0 2,408,627 - Psyr_2061 0.57 +0.6 2,408,627 - Psyr_2061 0.57 -0.4 2,408,627 - Psyr_2061 0.57 -0.7 2,408,627 - Psyr_2061 0.57 -0.1 2,408,627 - Psyr_2061 0.57 +0.5 2,408,628 + Psyr_2061 0.57 -0.2 2,408,629 - Psyr_2061 0.57 +1.1
Or see this region's nucleotide sequence