Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2060

Experiment: KB with 2',5'-Dihydroxy-4-Methoxychalcone 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2059 and Psyr_2060 are separated by 102 nucleotidesPsyr_2060 and Psyr_2061 are separated by 180 nucleotides Psyr_2059: Psyr_2059 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 2,405,242 to 2,406,717 _2059 Psyr_2060: Psyr_2060 - Sec-independent protein translocase TatD, at 2,406,820 to 2,407,641 _2060 Psyr_2061: Psyr_2061 - SLT, at 2,407,822 to 2,409,243 _2061 Position (kb) 2406 2407 2408Strain fitness (log2 ratio) -2 -1 0 1 2at 2406.501 kb on - strand, within Psyr_2059at 2406.508 kb on + strand, within Psyr_2059at 2406.509 kb on - strand, within Psyr_2059at 2406.513 kb on + strand, within Psyr_2059at 2406.514 kb on - strand, within Psyr_2059at 2406.626 kb on + strandat 2406.683 kb on + strandat 2406.683 kb on + strandat 2406.684 kb on - strandat 2406.684 kb on - strandat 2406.684 kb on - strandat 2406.822 kb on - strandat 2406.925 kb on + strand, within Psyr_2060at 2406.925 kb on + strand, within Psyr_2060at 2406.925 kb on + strand, within Psyr_2060at 2406.925 kb on + strand, within Psyr_2060at 2407.133 kb on + strand, within Psyr_2060at 2407.337 kb on + strand, within Psyr_2060at 2407.337 kb on + strand, within Psyr_2060at 2407.337 kb on + strand, within Psyr_2060at 2407.562 kb on + strandat 2407.647 kb on + strandat 2407.989 kb on + strand, within Psyr_2061at 2407.990 kb on - strand, within Psyr_2061at 2408.032 kb on + strand, within Psyr_2061at 2408.032 kb on + strand, within Psyr_2061at 2408.033 kb on - strand, within Psyr_2061at 2408.458 kb on + strand, within Psyr_2061at 2408.459 kb on - strand, within Psyr_2061at 2408.560 kb on - strand, within Psyr_2061at 2408.626 kb on + strand, within Psyr_2061at 2408.626 kb on + strand, within Psyr_2061at 2408.626 kb on + strand, within Psyr_2061at 2408.626 kb on + strand, within Psyr_2061at 2408.627 kb on - strand, within Psyr_2061at 2408.627 kb on - strand, within Psyr_2061at 2408.627 kb on - strand, within Psyr_2061at 2408.627 kb on - strand, within Psyr_2061at 2408.627 kb on - strand, within Psyr_2061at 2408.628 kb on + strand, within Psyr_2061at 2408.629 kb on - strand, within Psyr_2061

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with 2',5'-Dihydroxy-4-Methoxychalcone 10 mM
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2,406,501 - Psyr_2059 0.85 -2.1
2,406,508 + Psyr_2059 0.86 +0.6
2,406,509 - Psyr_2059 0.86 -0.2
2,406,513 + Psyr_2059 0.86 -0.2
2,406,514 - Psyr_2059 0.86 -1.9
2,406,626 + +0.4
2,406,683 + +0.2
2,406,683 + +1.9
2,406,684 - +0.8
2,406,684 - -1.1
2,406,684 - -0.4
2,406,822 - -0.0
2,406,925 + Psyr_2060 0.13 -0.7
2,406,925 + Psyr_2060 0.13 +0.2
2,406,925 + Psyr_2060 0.13 +0.3
2,406,925 + Psyr_2060 0.13 -1.5
2,407,133 + Psyr_2060 0.38 -0.5
2,407,337 + Psyr_2060 0.63 -1.3
2,407,337 + Psyr_2060 0.63 -1.5
2,407,337 + Psyr_2060 0.63 -0.1
2,407,562 + -0.5
2,407,647 + -0.7
2,407,989 + Psyr_2061 0.12 -1.2
2,407,990 - Psyr_2061 0.12 +0.3
2,408,032 + Psyr_2061 0.15 +0.2
2,408,032 + Psyr_2061 0.15 +0.5
2,408,033 - Psyr_2061 0.15 +0.1
2,408,458 + Psyr_2061 0.45 +0.3
2,408,459 - Psyr_2061 0.45 +1.7
2,408,560 - Psyr_2061 0.52 +0.9
2,408,626 + Psyr_2061 0.57 +0.1
2,408,626 + Psyr_2061 0.57 +1.6
2,408,626 + Psyr_2061 0.57 +0.4
2,408,626 + Psyr_2061 0.57 +1.0
2,408,627 - Psyr_2061 0.57 +0.6
2,408,627 - Psyr_2061 0.57 -0.4
2,408,627 - Psyr_2061 0.57 -0.7
2,408,627 - Psyr_2061 0.57 -0.1
2,408,627 - Psyr_2061 0.57 +0.5
2,408,628 + Psyr_2061 0.57 -0.2
2,408,629 - Psyr_2061 0.57 +1.1

Or see this region's nucleotide sequence