Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS20450

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
4,609,149	+		PFLU_RS20440	0.59	+0.1
4,609,150	-		PFLU_RS20440	0.59	-0.2
4,609,162	+		PFLU_RS20440	0.60	+0.3
4,609,162	+		PFLU_RS20440	0.60	-1.3
4,609,162	+		PFLU_RS20440	0.60	-1.6
4,609,162	+		PFLU_RS20440	0.60	+1.5
4,609,162	+		PFLU_RS20440	0.60	+0.7
4,609,162	+		PFLU_RS20440	0.60	+0.7
4,609,162	+		PFLU_RS20440	0.60	-1.9
4,609,162	+		PFLU_RS20440	0.60	-0.7
4,609,162	+		PFLU_RS20440	0.60	-1.1
4,609,162	+		PFLU_RS20440	0.60	-2.0
4,609,162	+		PFLU_RS20440	0.60	+0.4
4,609,162	+		PFLU_RS20440	0.60	-1.4
4,609,162	+		PFLU_RS20440	0.60	-0.4
4,609,162	+		PFLU_RS20440	0.60	-1.6
4,609,162	+		PFLU_RS20440	0.60	+2.0
4,609,163	-		PFLU_RS20440	0.60	-0.4
4,609,163	-		PFLU_RS20440	0.60	+0.4
4,609,163	-		PFLU_RS20440	0.60	-1.9
4,609,163	-		PFLU_RS20440	0.60	+0.4
4,609,163	-		PFLU_RS20440	0.60	-0.6
4,609,163	-		PFLU_RS20440	0.60	+1.4
4,609,163	-		PFLU_RS20440	0.60	+1.1
4,609,163	-		PFLU_RS20440	0.60	-1.6
4,609,163	-		PFLU_RS20440	0.60	+0.5
4,609,182	+		PFLU_RS20440	0.61	-0.8
4,609,182	+		PFLU_RS20440	0.61	-0.2
4,609,183	-		PFLU_RS20440	0.61	+0.1
4,609,183	-		PFLU_RS20440	0.61	+0.8
4,609,183	-		PFLU_RS20440	0.61	+1.0
4,609,183	-		PFLU_RS20440	0.61	+0.1
4,609,183	-		PFLU_RS20440	0.61	-2.1
4,609,183	-		PFLU_RS20440	0.61	-1.4
4,609,298	+		PFLU_RS20440	0.69	+0.8
4,609,298	+		PFLU_RS20440	0.69	-0.1
4,609,298	+		PFLU_RS20440	0.69	-0.3
4,609,298	+		PFLU_RS20440	0.69	+0.2
4,609,298	+		PFLU_RS20440	0.69	+1.3
4,609,298	+		PFLU_RS20440	0.69	-0.6
4,609,298	+		PFLU_RS20440	0.69	+0.5
4,609,298	+		PFLU_RS20440	0.69	-0.9
4,609,298	+		PFLU_RS20440	0.69	+0.9
4,609,298	+		PFLU_RS20440	0.69	+0.4
4,609,298	+		PFLU_RS20440	0.69	-0.2
4,609,298	+		PFLU_RS20440	0.69	-1.4
4,609,299	-		PFLU_RS20440	0.69	-1.0
4,609,299	-		PFLU_RS20440	0.69	+1.1
4,609,299	-		PFLU_RS20440	0.69	-1.6
4,609,299	-		PFLU_RS20440	0.69	-0.4
4,609,299	-		PFLU_RS20440	0.69	-0.1
4,609,299	-		PFLU_RS20440	0.69	+0.1
4,609,299	-		PFLU_RS20440	0.69	-2.4
4,609,299	-		PFLU_RS20440	0.69	+0.9
4,609,299	-		PFLU_RS20440	0.69	+0.7
4,609,299	-		PFLU_RS20440	0.69	+1.8
4,609,315	+		PFLU_RS20440	0.71	+0.7
4,609,315	+		PFLU_RS20440	0.71	-0.4
4,609,316	-		PFLU_RS20440	0.71	-0.4
4,609,316	-		PFLU_RS20440	0.71	+0.6
4,609,316	-		PFLU_RS20440	0.71	-0.3
4,609,434	+		PFLU_RS20440	0.79	-2.2
4,609,434	+		PFLU_RS20440	0.79	-1.6
4,609,434	+		PFLU_RS20440	0.79	+0.9
4,609,434	+		PFLU_RS20440	0.79	-2.4
4,609,435	-		PFLU_RS20440	0.79	+0.1
4,609,435	-		PFLU_RS20440	0.79	-1.8
4,609,435	-		PFLU_RS20440	0.79	-0.8
4,609,435	-		PFLU_RS20440	0.79	-0.8
4,609,435	-		PFLU_RS20440	0.79	+2.5
4,609,435	-		PFLU_RS20440	0.79	+0.0
4,609,438	+		PFLU_RS20440	0.79	-0.2
4,609,438	+		PFLU_RS20440	0.79	+0.4
4,609,438	+		PFLU_RS20440	0.79	-1.5
4,609,438	+		PFLU_RS20440	0.79	+0.2
4,609,438	+		PFLU_RS20440	0.79	+0.4
4,609,438	+		PFLU_RS20440	0.79	-0.4
4,609,438	+		PFLU_RS20440	0.79	-1.4
4,609,439	-		PFLU_RS20440	0.79	-0.2
4,609,439	-		PFLU_RS20440	0.79	+1.1
4,609,439	-		PFLU_RS20440	0.79	-0.5
4,609,439	-		PFLU_RS20440	0.79	+0.1
4,609,439	-		PFLU_RS20440	0.79	-0.8
4,609,439	-		PFLU_RS20440	0.79	-0.9
4,609,439	-		PFLU_RS20440	0.79	+0.7
4,609,439	-		PFLU_RS20440	0.79	-0.8
4,609,452	+		PFLU_RS20440	0.80	+0.4
4,609,452	+		PFLU_RS20440	0.80	-1.5
4,609,452	+		PFLU_RS20440	0.80	-0.8
4,609,452	+		PFLU_RS20440	0.80	+1.1
4,609,452	+		PFLU_RS20440	0.80	-0.4
4,609,571	+		PFLU_RS20440	0.89	+0.1
4,609,571	+		PFLU_RS20440	0.89	-1.5
4,609,571	+		PFLU_RS20440	0.89	-0.9
4,609,571	+		PFLU_RS20440	0.89	-1.1
4,609,657	+				-0.1
4,609,657	+				-0.7
4,609,658	-				-1.2
4,609,658	-				-0.1
4,609,658	-				+1.0
4,609,658	-				-1.9
4,609,658	-				+1.6
4,609,726	+				-1.5
4,609,726	+				+1.3
4,609,727	-				+1.0
4,609,727	-				+1.0
4,609,727	-				-0.2
4,609,740	+				+0.5
4,609,741	-				-1.0
4,609,741	-				+0.3
4,609,762	+				-0.8
4,609,762	+				-0.8
4,609,763	-				+0.5
4,609,763	-				+0.4
4,609,763	-				+0.0
4,609,784	+				+0.5
4,609,784	+				+1.5
4,609,784	+				+0.1
4,609,784	+				+0.7
4,609,784	+				-0.9
4,609,785	-				+0.5
4,609,785	-				-0.3
4,609,785	-				+0.5
4,609,785	-				-1.2
4,609,785	-				-0.9
4,609,785	-				-1.0
4,609,785	-				+0.6
4,609,785	-				-0.3
4,609,785	-				-2.6
4,609,785	-				-0.4
4,609,785	-				+1.3
4,609,859	+				+0.5
4,609,859	+				-1.2
4,609,859	+				+1.7
4,609,871	+				-0.3
4,609,871	+				+0.2
4,609,871	+				+2.2
4,609,871	+				+0.7
4,609,872	-				+0.5
4,609,941	+		PFLU_RS20445	0.40	+0.7
4,609,941	+		PFLU_RS20445	0.40	+0.0
4,609,942	-		PFLU_RS20445	0.40	-1.5
4,609,990	-		PFLU_RS20445	0.61	-0.8
4,609,990	-		PFLU_RS20445	0.61	+0.7
4,609,990	-		PFLU_RS20445	0.61	-0.1
4,609,999	+		PFLU_RS20445	0.65	+0.1
4,610,000	-		PFLU_RS20445	0.66	+0.0
4,610,000	-		PFLU_RS20445	0.66	-1.1
4,610,000	-		PFLU_RS20445	0.66	+0.4
4,610,000	-		PFLU_RS20445	0.66	+0.4
4,610,000	-		PFLU_RS20445	0.66	+1.2
4,610,000	-		PFLU_RS20445	0.66	-0.1
4,610,000	-		PFLU_RS20445	0.66	-0.2
4,610,000	-		PFLU_RS20445	0.66	-1.1
4,610,040	+		PFLU_RS20445	0.84	-1.3
4,610,228	+		PFLU_RS20450	0.21	-1.3
4,610,228	+		PFLU_RS20450	0.21	+0.1
4,610,233	+		PFLU_RS20450	0.22	+0.1
4,610,233	+		PFLU_RS20450	0.22	+1.2
4,610,233	+		PFLU_RS20450	0.22	+1.4
4,610,233	+		PFLU_RS20450	0.22	-1.6
4,610,233	+		PFLU_RS20450	0.22	-0.8
4,610,233	+		PFLU_RS20450	0.22	-1.7
4,610,233	+		PFLU_RS20450	0.22	+0.0
4,610,233	+		PFLU_RS20450	0.22	+0.0
4,610,233	+		PFLU_RS20450	0.22	+2.1
4,610,234	-		PFLU_RS20450	0.22	+1.2
4,610,234	-		PFLU_RS20450	0.22	+0.3
4,610,234	-		PFLU_RS20450	0.22	-0.1
4,610,234	-		PFLU_RS20450	0.22	+1.1
4,610,234	-		PFLU_RS20450	0.22	+1.5
4,610,241	+		PFLU_RS20450	0.23	-0.5
4,610,241	+		PFLU_RS20450	0.23	+0.2
4,610,255	-		PFLU_RS20450	0.25	+0.9
4,610,284	+		PFLU_RS20450	0.30	+0.4
4,610,284	+		PFLU_RS20450	0.30	+0.5
4,610,285	-		PFLU_RS20450	0.30	-0.7
4,610,288	+		PFLU_RS20450	0.31	+1.7
4,610,288	+		PFLU_RS20450	0.31	+1.3
4,610,288	+		PFLU_RS20450	0.31	+1.7
4,610,289	-		PFLU_RS20450	0.31	+2.2
4,610,289	-		PFLU_RS20450	0.31	+1.5
4,610,289	-		PFLU_RS20450	0.31	+1.1
4,610,289	-		PFLU_RS20450	0.31	+0.9
4,610,301	+		PFLU_RS20450	0.33	+1.8
4,610,301	+		PFLU_RS20450	0.33	+0.1
4,610,301	+		PFLU_RS20450	0.33	+0.4
4,610,301	+		PFLU_RS20450	0.33	-0.5
4,610,301	+		PFLU_RS20450	0.33	+1.6
4,610,301	+		PFLU_RS20450	0.33	-0.5
4,610,301	+		PFLU_RS20450	0.33	+0.6
4,610,302	-		PFLU_RS20450	0.33	+0.6
4,610,302	-		PFLU_RS20450	0.33	-0.3
4,610,302	-		PFLU_RS20450	0.33	+1.3
4,610,302	-		PFLU_RS20450	0.33	-1.2
4,610,302	-		PFLU_RS20450	0.33	-0.4
4,610,302	-		PFLU_RS20450	0.33	+1.4
4,610,396	+		PFLU_RS20450	0.47	+1.3
4,610,396	+		PFLU_RS20450	0.47	+1.3
4,610,397	-		PFLU_RS20450	0.48	+1.0
4,610,397	-		PFLU_RS20450	0.48	+1.4
4,610,397	-		PFLU_RS20450	0.48	+2.9
4,610,397	-		PFLU_RS20450	0.48	-0.0
4,610,397	-		PFLU_RS20450	0.48	-0.8
4,610,502	+		PFLU_RS20450	0.64	+1.7
4,610,502	+		PFLU_RS20450	0.64	-1.1
4,610,503	-		PFLU_RS20450	0.64	-1.2
4,610,503	-		PFLU_RS20450	0.64	+1.7
4,610,503	-		PFLU_RS20450	0.64	+1.7
4,610,619	+		PFLU_RS20450	0.82	+1.6
4,610,620	-		PFLU_RS20450	0.82	-0.5
4,610,620	-		PFLU_RS20450	0.82	-1.0
4,610,723	-				-0.8
4,610,754	+				-1.3
4,610,754	+				+0.5
4,610,754	+				+0.5
4,610,754	+				+2.1
4,610,754	+				+0.8
4,610,755	-				+1.5
4,610,755	-				+1.1
4,610,755	-				+0.8
4,610,755	-				+1.0
4,610,755	-				+1.2
4,610,755	-				-0.2
4,610,767	+				+0.5
4,610,767	+				-0.4
4,610,767	+				+0.6
4,610,767	+				+0.2
4,610,767	+				-0.8
4,610,767	+				+1.6
4,610,767	+				+1.6
4,610,767	+				+0.1
4,610,767	+				+0.7
4,610,768	-				+1.5
4,610,768	-				-0.3
4,610,858	-		PFLU_RS20455	0.12	+0.3
4,610,875	+		PFLU_RS20455	0.14	+1.0
4,610,876	-		PFLU_RS20455	0.14	+2.2
4,610,876	-		PFLU_RS20455	0.14	+1.9
4,610,876	-		PFLU_RS20455	0.14	-0.1
4,610,946	+		PFLU_RS20455	0.22	+2.1
4,610,947	-		PFLU_RS20455	0.22	+0.1
4,610,947	-		PFLU_RS20455	0.22	-0.1
4,610,947	-		PFLU_RS20455	0.22	+0.4
4,610,950	+		PFLU_RS20455	0.22	+0.4
4,610,950	+		PFLU_RS20455	0.22	+1.1
4,610,950	+		PFLU_RS20455	0.22	+0.9
4,610,950	+		PFLU_RS20455	0.22	+0.1
4,610,951	-		PFLU_RS20455	0.22	+0.1
4,611,025	+		PFLU_RS20455	0.30	+2.1
4,611,025	+		PFLU_RS20455	0.30	+0.7
4,611,026	-		PFLU_RS20455	0.30	+0.7
4,611,048	+		PFLU_RS20455	0.32	+2.5
4,611,048	+		PFLU_RS20455	0.32	+1.8
4,611,048	+		PFLU_RS20455	0.32	+0.4
4,611,048	+		PFLU_RS20455	0.32	+2.0
4,611,048	+		PFLU_RS20455	0.32	+2.9
4,611,049	-		PFLU_RS20455	0.32	+1.2
4,611,049	-		PFLU_RS20455	0.32	+0.9
4,611,049	-		PFLU_RS20455	0.32	+0.1
4,611,085	+		PFLU_RS20455	0.36	+0.5
4,611,085	+		PFLU_RS20455	0.36	+2.6
4,611,085	+		PFLU_RS20455	0.36	-0.4
4,611,086	-		PFLU_RS20455	0.36	+1.0
4,611,086	-		PFLU_RS20455	0.36	+1.7
4,611,087	+		PFLU_RS20455	0.36	+1.0
4,611,087	+		PFLU_RS20455	0.36	+1.0
4,611,087	+		PFLU_RS20455	0.36	+1.9
4,611,087	+		PFLU_RS20455	0.36	+1.2
4,611,087	+		PFLU_RS20455	0.36	+1.8
4,611,087	+		PFLU_RS20455	0.36	+0.5
4,611,087	+		PFLU_RS20455	0.36	+1.5
4,611,087	+		PFLU_RS20455	0.36	-0.2
4,611,087	+		PFLU_RS20455	0.36	+0.5
4,611,087	+		PFLU_RS20455	0.36	+0.8
4,611,087	+		PFLU_RS20455	0.36	+1.4
4,611,087	+		PFLU_RS20455	0.36	+0.6
4,611,087	+		PFLU_RS20455	0.36	+0.2
4,611,087	+		PFLU_RS20455	0.36	+1.6
4,611,087	+		PFLU_RS20455	0.36	+0.9
4,611,087	+		PFLU_RS20455	0.36	+0.8
4,611,087	+		PFLU_RS20455	0.36	+0.9
4,611,087	+		PFLU_RS20455	0.36	-0.3
4,611,087	+		PFLU_RS20455	0.36	+0.6
4,611,087	+		PFLU_RS20455	0.36	+1.0
4,611,088	-		PFLU_RS20455	0.36	+0.1
4,611,088	-		PFLU_RS20455	0.36	+1.5
4,611,088	-		PFLU_RS20455	0.36	+0.7
4,611,088	-		PFLU_RS20455	0.36	+1.7
4,611,088	-		PFLU_RS20455	0.36	+1.8
4,611,088	-		PFLU_RS20455	0.36	+0.7
4,611,088	-		PFLU_RS20455	0.36	+1.6
4,611,088	-		PFLU_RS20455	0.36	+0.8
4,611,088	-		PFLU_RS20455	0.36	+0.6
4,611,088	-		PFLU_RS20455	0.36	+0.4
4,611,088	-		PFLU_RS20455	0.36	+1.0
4,611,088	-		PFLU_RS20455	0.36	+0.7
4,611,155	+		PFLU_RS20455	0.44	+1.5
4,611,232	+		PFLU_RS20455	0.52	+1.2
4,611,509	+		PFLU_RS20455	0.81	+1.9
4,611,509	+		PFLU_RS20455	0.81	+1.1
4,611,601	+				+1.8
4,611,601	+				-1.1
4,611,602	-				+1.3
4,611,602	-				+1.0
4,611,602	-				+1.4
4,611,602	-				+0.3
4,611,629	-				+0.7
4,611,666	+				+1.8
4,611,666	+				+0.8
4,611,667	-				+1.0
4,611,672	+				+1.9
4,611,672	+				-1.4
4,611,672	+				+1.4
4,611,672	+				+1.1
4,611,673	-				-0.1
4,611,673	-				-0.4
4,611,673	-				+0.2
4,611,673	-				+2.7
4,611,673	-				+0.9
4,611,673	-				+1.2