Experiment: 2'-Deoxycytidine 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15145 and BWI76_RS15150 overlap by 1 nucleotides BWI76_RS15150 and BWI76_RS15155 are separated by 13 nucleotides BWI76_RS15155 and BWI76_RS15160 are separated by 72 nucleotides
BWI76_RS15145: BWI76_RS15145 - efflux transporter periplasmic adaptor subunit, at 3,175,375 to 3,176,844
_RS15145
BWI76_RS15150: BWI76_RS15150 - outer membrane efflux protein, at 3,176,844 to 3,178,091
_RS15150
BWI76_RS15155: BWI76_RS15155 - hypothetical protein, at 3,178,105 to 3,178,473
_RS15155
BWI76_RS15160: BWI76_RS15160 - hypothetical protein, at 3,178,546 to 3,178,965
_RS15160
Position (kb)
3176
3177
3178
3179 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3176.300 kb on + strand, within BWI76_RS15145 at 3176.374 kb on - strand, within BWI76_RS15145 at 3176.588 kb on + strand, within BWI76_RS15145 at 3176.656 kb on + strand, within BWI76_RS15145 at 3176.712 kb on - strand at 3177.188 kb on - strand, within BWI76_RS15150 at 3177.270 kb on - strand, within BWI76_RS15150 at 3177.314 kb on - strand, within BWI76_RS15150 at 3177.349 kb on + strand, within BWI76_RS15150 at 3177.979 kb on + strand at 3178.003 kb on + strand at 3178.097 kb on + strand at 3178.135 kb on + strand at 3178.135 kb on + strand at 3178.143 kb on - strand, within BWI76_RS15155 at 3178.205 kb on - strand, within BWI76_RS15155 at 3178.216 kb on + strand, within BWI76_RS15155 at 3178.217 kb on - strand, within BWI76_RS15155 at 3178.217 kb on - strand, within BWI76_RS15155 at 3178.224 kb on - strand, within BWI76_RS15155 at 3178.227 kb on + strand, within BWI76_RS15155 at 3178.232 kb on + strand, within BWI76_RS15155 at 3178.235 kb on - strand, within BWI76_RS15155 at 3178.235 kb on - strand, within BWI76_RS15155 at 3178.245 kb on - strand, within BWI76_RS15155 at 3178.246 kb on + strand, within BWI76_RS15155 at 3178.277 kb on - strand, within BWI76_RS15155 at 3178.378 kb on - strand, within BWI76_RS15155 at 3178.378 kb on - strand, within BWI76_RS15155 at 3178.422 kb on + strand, within BWI76_RS15155 at 3178.429 kb on + strand, within BWI76_RS15155 at 3178.437 kb on - strand at 3178.504 kb on + strand at 3178.514 kb on + strand at 3178.514 kb on + strand at 3178.514 kb on + strand at 3178.519 kb on + strand at 3178.519 kb on + strand at 3178.519 kb on + strand at 3178.522 kb on - strand at 3178.522 kb on - strand at 3178.539 kb on - strand at 3178.574 kb on - strand at 3178.607 kb on - strand, within BWI76_RS15160 at 3178.607 kb on - strand, within BWI76_RS15160 at 3178.609 kb on + strand, within BWI76_RS15160 at 3178.609 kb on + strand, within BWI76_RS15160 at 3178.609 kb on + strand, within BWI76_RS15160 at 3178.617 kb on + strand, within BWI76_RS15160 at 3178.617 kb on - strand, within BWI76_RS15160 at 3178.617 kb on - strand, within BWI76_RS15160 at 3178.617 kb on - strand, within BWI76_RS15160 at 3178.627 kb on + strand, within BWI76_RS15160 at 3178.669 kb on - strand, within BWI76_RS15160 at 3178.684 kb on - strand, within BWI76_RS15160 at 3178.691 kb on - strand, within BWI76_RS15160 at 3178.691 kb on - strand, within BWI76_RS15160 at 3178.694 kb on - strand, within BWI76_RS15160 at 3178.723 kb on - strand, within BWI76_RS15160 at 3178.805 kb on + strand, within BWI76_RS15160 at 3178.863 kb on + strand, within BWI76_RS15160 at 3178.863 kb on + strand, within BWI76_RS15160 at 3178.863 kb on + strand, within BWI76_RS15160 at 3178.863 kb on + strand, within BWI76_RS15160 at 3178.863 kb on + strand, within BWI76_RS15160 at 3178.863 kb on + strand, within BWI76_RS15160 at 3178.863 kb on + strand, within BWI76_RS15160 at 3178.863 kb on + strand, within BWI76_RS15160 at 3178.868 kb on + strand at 3178.871 kb on - strand, within BWI76_RS15160 at 3178.871 kb on - strand, within BWI76_RS15160 at 3178.871 kb on - strand, within BWI76_RS15160 at 3178.871 kb on - strand, within BWI76_RS15160 at 3178.871 kb on - strand at 3178.871 kb on - strand, within BWI76_RS15160 at 3178.871 kb on - strand, within BWI76_RS15160 at 3178.876 kb on - strand, within BWI76_RS15160 at 3178.878 kb on + strand, within BWI76_RS15160 at 3178.886 kb on - strand at 3178.894 kb on + strand, within BWI76_RS15160 at 3178.894 kb on + strand, within BWI76_RS15160 at 3178.950 kb on + strand at 3178.969 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxycytidine 10 mM (C) remove 3,176,300 + BWI76_RS15145 0.63 -1.9 3,176,374 - BWI76_RS15145 0.68 +0.8 3,176,588 + BWI76_RS15145 0.83 +0.8 3,176,656 + BWI76_RS15145 0.87 +1.7 3,176,712 - +0.1 3,177,188 - BWI76_RS15150 0.28 -1.1 3,177,270 - BWI76_RS15150 0.34 -1.8 3,177,314 - BWI76_RS15150 0.38 -1.0 3,177,349 + BWI76_RS15150 0.40 -0.8 3,177,979 + -1.3 3,178,003 + -0.1 3,178,097 + -1.2 3,178,135 + -0.0 3,178,135 + -0.9 3,178,143 - BWI76_RS15155 0.10 -0.3 3,178,205 - BWI76_RS15155 0.27 +0.4 3,178,216 + BWI76_RS15155 0.30 -3.7 3,178,217 - BWI76_RS15155 0.30 -1.0 3,178,217 - BWI76_RS15155 0.30 -0.5 3,178,224 - BWI76_RS15155 0.32 +0.1 3,178,227 + BWI76_RS15155 0.33 +0.2 3,178,232 + BWI76_RS15155 0.34 +0.4 3,178,235 - BWI76_RS15155 0.35 -0.1 3,178,235 - BWI76_RS15155 0.35 -1.4 3,178,245 - BWI76_RS15155 0.38 -1.1 3,178,246 + BWI76_RS15155 0.38 -0.4 3,178,277 - BWI76_RS15155 0.47 +0.1 3,178,378 - BWI76_RS15155 0.74 +0.4 3,178,378 - BWI76_RS15155 0.74 +0.1 3,178,422 + BWI76_RS15155 0.86 +0.3 3,178,429 + BWI76_RS15155 0.88 +0.0 3,178,437 - +0.6 3,178,504 + -0.8 3,178,514 + -0.2 3,178,514 + -0.4 3,178,514 + +0.0 3,178,519 + -0.3 3,178,519 + -1.8 3,178,519 + +0.9 3,178,522 - -2.6 3,178,522 - +0.0 3,178,539 - +1.3 3,178,574 - -1.4 3,178,607 - BWI76_RS15160 0.15 -0.2 3,178,607 - BWI76_RS15160 0.15 -0.6 3,178,609 + BWI76_RS15160 0.15 -0.4 3,178,609 + BWI76_RS15160 0.15 +0.5 3,178,609 + BWI76_RS15160 0.15 +0.2 3,178,617 + BWI76_RS15160 0.17 +0.7 3,178,617 - BWI76_RS15160 0.17 +0.1 3,178,617 - BWI76_RS15160 0.17 -0.5 3,178,617 - BWI76_RS15160 0.17 +0.0 3,178,627 + BWI76_RS15160 0.19 -0.6 3,178,669 - BWI76_RS15160 0.29 +0.6 3,178,684 - BWI76_RS15160 0.33 +0.5 3,178,691 - BWI76_RS15160 0.35 +1.7 3,178,691 - BWI76_RS15160 0.35 -0.1 3,178,694 - BWI76_RS15160 0.35 -0.4 3,178,723 - BWI76_RS15160 0.42 +0.2 3,178,805 + BWI76_RS15160 0.62 -0.3 3,178,863 + BWI76_RS15160 0.75 +0.1 3,178,863 + BWI76_RS15160 0.75 -2.6 3,178,863 + BWI76_RS15160 0.75 +0.1 3,178,863 + BWI76_RS15160 0.75 +0.5 3,178,863 + BWI76_RS15160 0.75 -2.2 3,178,863 + BWI76_RS15160 0.75 -0.6 3,178,863 + BWI76_RS15160 0.75 +0.3 3,178,863 + BWI76_RS15160 0.75 -1.3 3,178,868 + -0.3 3,178,871 - BWI76_RS15160 0.77 -1.8 3,178,871 - BWI76_RS15160 0.77 +0.2 3,178,871 - BWI76_RS15160 0.77 -0.1 3,178,871 - BWI76_RS15160 0.77 +0.4 3,178,871 - +0.7 3,178,871 - BWI76_RS15160 0.77 +0.6 3,178,871 - BWI76_RS15160 0.77 +0.3 3,178,876 - BWI76_RS15160 0.79 +1.2 3,178,878 + BWI76_RS15160 0.79 -0.2 3,178,886 - -0.3 3,178,894 + BWI76_RS15160 0.83 -0.6 3,178,894 + BWI76_RS15160 0.83 +0.6 3,178,950 + -0.8 3,178,969 - -0.8
Or see this region's nucleotide sequence