Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06955

Experiment: 2'-Deoxycytidine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06945 and BWI76_RS06950 overlap by 63 nucleotidesBWI76_RS06950 and BWI76_RS06955 overlap by 4 nucleotidesBWI76_RS06955 and BWI76_RS06960 are separated by 70 nucleotidesBWI76_RS06960 and BWI76_RS06965 are separated by 209 nucleotides BWI76_RS06945: BWI76_RS06945 - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 1,458,356 to 1,459,012 _RS06945 BWI76_RS06950: BWI76_RS06950 - ABC transporter ATP-binding protein, at 1,458,950 to 1,459,636 _RS06950 BWI76_RS06955: BWI76_RS06955 - sugar ABC transporter permease, at 1,459,633 to 1,462,050 _RS06955 BWI76_RS06960: BWI76_RS06960 - monooxygenase, at 1,462,121 to 1,462,426 _RS06960 BWI76_RS06965: BWI76_RS06965 - membrane protein, at 1,462,636 to 1,463,781 _RS06965 Position (kb) 1459 1460 1461 1462 1463Strain fitness (log2 ratio) -3 -2 -1 0 1at 1458.679 kb on + strand, within BWI76_RS06945at 1458.819 kb on + strand, within BWI76_RS06945at 1458.827 kb on - strand, within BWI76_RS06945at 1459.254 kb on + strand, within BWI76_RS06950at 1459.345 kb on - strand, within BWI76_RS06950at 1459.445 kb on + strand, within BWI76_RS06950at 1459.816 kb on - strandat 1459.821 kb on - strandat 1459.849 kb on + strandat 1459.993 kb on - strand, within BWI76_RS06955at 1460.075 kb on + strand, within BWI76_RS06955at 1460.075 kb on + strand, within BWI76_RS06955at 1460.123 kb on + strand, within BWI76_RS06955at 1460.321 kb on + strand, within BWI76_RS06955at 1460.849 kb on - strand, within BWI76_RS06955at 1461.119 kb on + strand, within BWI76_RS06955at 1461.143 kb on - strand, within BWI76_RS06955at 1461.243 kb on - strand, within BWI76_RS06955at 1461.256 kb on + strand, within BWI76_RS06955at 1461.366 kb on - strand, within BWI76_RS06955at 1461.869 kb on + strandat 1462.278 kb on + strand, within BWI76_RS06960at 1462.692 kb on - strandat 1462.801 kb on + strand, within BWI76_RS06965at 1462.891 kb on - strand, within BWI76_RS06965at 1462.938 kb on - strand, within BWI76_RS06965at 1462.991 kb on - strand, within BWI76_RS06965at 1463.012 kb on - strand, within BWI76_RS06965at 1463.012 kb on - strand, within BWI76_RS06965

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxycytidine 10 mM (C)
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1,458,679 + BWI76_RS06945 0.49 +0.2
1,458,819 + BWI76_RS06945 0.70 -0.2
1,458,827 - BWI76_RS06945 0.72 +1.2
1,459,254 + BWI76_RS06950 0.44 -0.3
1,459,345 - BWI76_RS06950 0.57 +0.1
1,459,445 + BWI76_RS06950 0.72 -0.7
1,459,816 - +0.2
1,459,821 - -1.8
1,459,849 + +0.3
1,459,993 - BWI76_RS06955 0.15 -0.4
1,460,075 + BWI76_RS06955 0.18 -1.7
1,460,075 + BWI76_RS06955 0.18 -0.4
1,460,123 + BWI76_RS06955 0.20 -0.0
1,460,321 + BWI76_RS06955 0.28 -0.2
1,460,849 - BWI76_RS06955 0.50 +0.2
1,461,119 + BWI76_RS06955 0.61 -0.2
1,461,143 - BWI76_RS06955 0.62 -0.7
1,461,243 - BWI76_RS06955 0.67 -0.6
1,461,256 + BWI76_RS06955 0.67 +0.1
1,461,366 - BWI76_RS06955 0.72 -3.3
1,461,869 + -0.4
1,462,278 + BWI76_RS06960 0.51 -0.8
1,462,692 - -0.2
1,462,801 + BWI76_RS06965 0.14 -0.2
1,462,891 - BWI76_RS06965 0.22 -0.2
1,462,938 - BWI76_RS06965 0.26 +1.2
1,462,991 - BWI76_RS06965 0.31 +1.3
1,463,012 - BWI76_RS06965 0.33 +0.2
1,463,012 - BWI76_RS06965 0.33 -0.9

Or see this region's nucleotide sequence