Strain Fitness in Shewanella oneidensis MR-1 around SO0915

Experiment: fumarate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0914 and SO0915 are separated by 152 nucleotidesSO0915 and SO0916 are separated by 274 nucleotides SO0914: SO0914 - conserved hypothetical protein (NCBI ptt file), at 940,407 to 941,603 SO0914 SO0915: SO0915 - ankyrin domain protein (NCBI ptt file), at 941,756 to 944,206 SO0915 SO0916: SO0916 - transcriptional regulator, MarR family (NCBI ptt file), at 944,481 to 945,410 SO0916 Position (kb) 941 942 943 944 945Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 940.906 kb on + strand, within SO0914at 940.907 kb on + strand, within SO0914at 940.930 kb on + strand, within SO0914at 940.963 kb on - strand, within SO0914at 940.977 kb on - strand, within SO0914at 941.054 kb on - strand, within SO0914at 941.107 kb on + strand, within SO0914at 941.108 kb on - strand, within SO0914at 941.148 kb on - strand, within SO0914at 941.366 kb on - strand, within SO0914at 941.371 kb on + strand, within SO0914at 941.371 kb on + strand, within SO0914at 941.371 kb on + strand, within SO0914at 941.379 kb on - strand, within SO0914at 941.414 kb on + strand, within SO0914at 941.538 kb on - strandat 941.606 kb on - strandat 941.800 kb on + strandat 941.856 kb on + strandat 942.089 kb on - strand, within SO0915at 942.274 kb on - strand, within SO0915at 942.345 kb on - strand, within SO0915at 942.415 kb on - strand, within SO0915at 942.437 kb on - strand, within SO0915at 942.439 kb on + strand, within SO0915at 942.469 kb on + strand, within SO0915at 942.541 kb on + strand, within SO0915at 942.549 kb on - strand, within SO0915at 942.599 kb on + strand, within SO0915at 942.606 kb on + strand, within SO0915at 942.606 kb on + strand, within SO0915at 942.606 kb on + strand, within SO0915at 942.611 kb on + strand, within SO0915at 942.614 kb on - strand, within SO0915at 942.646 kb on - strand, within SO0915at 942.711 kb on + strand, within SO0915at 942.767 kb on + strand, within SO0915at 942.775 kb on - strand, within SO0915at 942.775 kb on - strand, within SO0915at 942.901 kb on + strand, within SO0915at 942.901 kb on + strand, within SO0915at 942.901 kb on + strand, within SO0915at 942.901 kb on + strand, within SO0915at 942.909 kb on - strand, within SO0915at 942.909 kb on - strand, within SO0915at 943.127 kb on + strand, within SO0915at 943.127 kb on + strand, within SO0915at 943.135 kb on - strand, within SO0915at 943.135 kb on - strand, within SO0915at 943.143 kb on + strand, within SO0915at 943.150 kb on - strand, within SO0915at 943.198 kb on + strand, within SO0915at 943.198 kb on + strand, within SO0915at 943.206 kb on - strand, within SO0915at 943.283 kb on - strand, within SO0915at 943.301 kb on - strand, within SO0915at 943.304 kb on - strand, within SO0915at 943.382 kb on - strand, within SO0915at 943.386 kb on - strand, within SO0915at 943.403 kb on - strand, within SO0915at 943.413 kb on + strand, within SO0915at 943.413 kb on + strand, within SO0915at 943.413 kb on + strand, within SO0915at 943.413 kb on + strand, within SO0915at 943.421 kb on - strand, within SO0915at 943.421 kb on - strand, within SO0915at 943.421 kb on - strand, within SO0915at 943.546 kb on + strand, within SO0915at 943.577 kb on + strand, within SO0915at 943.577 kb on + strand, within SO0915at 943.577 kb on + strand, within SO0915at 943.577 kb on + strand, within SO0915at 943.585 kb on - strand, within SO0915at 943.585 kb on - strand, within SO0915at 943.585 kb on - strand, within SO0915at 943.585 kb on - strand, within SO0915at 943.585 kb on - strand, within SO0915at 943.587 kb on + strand, within SO0915at 943.587 kb on + strand, within SO0915at 943.587 kb on + strand, within SO0915at 943.595 kb on - strand, within SO0915at 943.773 kb on - strand, within SO0915at 943.779 kb on - strand, within SO0915at 943.779 kb on - strand, within SO0915at 943.817 kb on + strand, within SO0915at 943.827 kb on + strand, within SO0915at 943.885 kb on + strand, within SO0915at 943.908 kb on + strand, within SO0915at 943.909 kb on + strand, within SO0915at 943.910 kb on - strand, within SO0915at 944.008 kb on + strandat 944.020 kb on + strandat 944.020 kb on + strandat 944.028 kb on - strandat 944.042 kb on + strandat 944.042 kb on + strandat 944.050 kb on - strandat 944.133 kb on + strandat 944.133 kb on + strandat 944.133 kb on + strandat 944.133 kb on + strandat 944.141 kb on - strandat 944.141 kb on - strandat 944.141 kb on - strandat 944.141 kb on - strandat 944.141 kb on - strandat 944.367 kb on + strandat 944.447 kb on + strandat 944.460 kb on + strandat 944.468 kb on - strandat 944.490 kb on + strandat 944.565 kb on + strandat 944.567 kb on - strandat 944.620 kb on - strand, within SO0916at 944.625 kb on + strand, within SO0916at 944.652 kb on + strand, within SO0916at 944.772 kb on + strand, within SO0916at 944.780 kb on - strand, within SO0916at 944.864 kb on + strand, within SO0916at 944.879 kb on - strand, within SO0916at 944.995 kb on + strand, within SO0916at 945.043 kb on + strand, within SO0916at 945.043 kb on + strand, within SO0916at 945.043 kb on + strand, within SO0916at 945.051 kb on - strand, within SO0916

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Per-strain Table

Position Strand Gene LocusTag Fraction fumarate electron acceptor
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940,906 + SO0914 0.42 +1.5
940,907 + SO0914 0.42 -0.1
940,930 + SO0914 0.44 -0.9
940,963 - SO0914 0.46 -0.7
940,977 - SO0914 0.48 -0.3
941,054 - SO0914 0.54 -0.7
941,107 + SO0914 0.58 +0.3
941,108 - SO0914 0.59 -2.1
941,148 - SO0914 0.62 -0.0
941,366 - SO0914 0.80 +0.1
941,371 + SO0914 0.81 -0.2
941,371 + SO0914 0.81 +0.7
941,371 + SO0914 0.81 +0.7
941,379 - SO0914 0.81 +0.2
941,414 + SO0914 0.84 -0.2
941,538 - -0.7
941,606 - -0.5
941,800 + +0.4
941,856 + -1.5
942,089 - SO0915 0.14 -0.3
942,274 - SO0915 0.21 -1.5
942,345 - SO0915 0.24 -1.0
942,415 - SO0915 0.27 -2.5
942,437 - SO0915 0.28 -0.3
942,439 + SO0915 0.28 -0.4
942,469 + SO0915 0.29 -0.2
942,541 + SO0915 0.32 +0.2
942,549 - SO0915 0.32 -0.4
942,599 + SO0915 0.34 +0.8
942,606 + SO0915 0.35 +0.8
942,606 + SO0915 0.35 +0.1
942,606 + SO0915 0.35 +4.2
942,611 + SO0915 0.35 +0.8
942,614 - SO0915 0.35 -1.5
942,646 - SO0915 0.36 -1.4
942,711 + SO0915 0.39 +0.2
942,767 + SO0915 0.41 -0.1
942,775 - SO0915 0.42 -0.6
942,775 - SO0915 0.42 -0.3
942,901 + SO0915 0.47 -0.5
942,901 + SO0915 0.47 -0.9
942,901 + SO0915 0.47 -2.4
942,901 + SO0915 0.47 -1.1
942,909 - SO0915 0.47 -0.5
942,909 - SO0915 0.47 -0.1
943,127 + SO0915 0.56 -0.3
943,127 + SO0915 0.56 +0.0
943,135 - SO0915 0.56 -0.8
943,135 - SO0915 0.56 -0.3
943,143 + SO0915 0.57 -0.2
943,150 - SO0915 0.57 -0.5
943,198 + SO0915 0.59 +0.6
943,198 + SO0915 0.59 +1.1
943,206 - SO0915 0.59 +2.3
943,283 - SO0915 0.62 +0.9
943,301 - SO0915 0.63 -0.2
943,304 - SO0915 0.63 -0.7
943,382 - SO0915 0.66 -0.5
943,386 - SO0915 0.67 -0.9
943,403 - SO0915 0.67 -1.3
943,413 + SO0915 0.68 -0.9
943,413 + SO0915 0.68 -0.2
943,413 + SO0915 0.68 -0.2
943,413 + SO0915 0.68 -0.5
943,421 - SO0915 0.68 -0.9
943,421 - SO0915 0.68 -0.6
943,421 - SO0915 0.68 -1.2
943,546 + SO0915 0.73 -1.0
943,577 + SO0915 0.74 +1.9
943,577 + SO0915 0.74 +0.2
943,577 + SO0915 0.74 -0.7
943,577 + SO0915 0.74 +0.1
943,585 - SO0915 0.75 -0.6
943,585 - SO0915 0.75 -0.6
943,585 - SO0915 0.75 -0.3
943,585 - SO0915 0.75 -2.6
943,585 - SO0915 0.75 +0.0
943,587 + SO0915 0.75 +1.8
943,587 + SO0915 0.75 -1.2
943,587 + SO0915 0.75 -0.8
943,595 - SO0915 0.75 -0.3
943,773 - SO0915 0.82 -0.9
943,779 - SO0915 0.83 -0.8
943,779 - SO0915 0.83 +0.5
943,817 + SO0915 0.84 -0.5
943,827 + SO0915 0.84 -1.0
943,885 + SO0915 0.87 -2.2
943,908 + SO0915 0.88 -1.0
943,909 + SO0915 0.88 -0.2
943,910 - SO0915 0.88 +0.6
944,008 + -0.5
944,020 + -0.1
944,020 + -1.0
944,028 - +0.4
944,042 + +0.1
944,042 + +0.6
944,050 - +1.2
944,133 + -0.5
944,133 + -0.5
944,133 + +0.2
944,133 + +0.4
944,141 - +0.4
944,141 - -0.0
944,141 - -1.4
944,141 - -1.7
944,141 - -0.1
944,367 + -0.2
944,447 + +0.2
944,460 + +0.2
944,468 - -0.1
944,490 + -0.1
944,565 + -0.2
944,567 - -1.1
944,620 - SO0916 0.15 +0.0
944,625 + SO0916 0.15 -0.2
944,652 + SO0916 0.18 -0.7
944,772 + SO0916 0.31 -2.0
944,780 - SO0916 0.32 -0.1
944,864 + SO0916 0.41 -0.5
944,879 - SO0916 0.43 +0.2
944,995 + SO0916 0.55 +0.8
945,043 + SO0916 0.60 +0.7
945,043 + SO0916 0.60 -1.0
945,043 + SO0916 0.60 -0.5
945,051 - SO0916 0.61 -0.1

Or see this region's nucleotide sequence